DNA barcoding marker | Acronym | Examples | References |
---|---|---|---|
Internal transcribed spacer | ITS | universal, Agaricus, Auricularia, Cora, Fomitopsis, Rhizoplaca, Sticta | Schoch et al. 2012; Leavitt et al. 2013; Lücking et al. 2014, 2017; Moncada et al. 2014, 2020; Irinyi et al. 2016; Badotti et al. 2017 |
Intergenic spacer | IGS | Schizophyllum | James et al. 2001 |
β-tubulin II | TUB2 | Amanita, Aspergillus, Pseudopestalotiopsis | Geml et al. 2006; Geiser et al. 2007; Maharachchikumbura et al. 2012, 2014; Fidler et al. 2017 |
DNA-directed RNA polymerase II subunit A | RPB1 | Inocybe | Matheny 2005 |
DNA-directed RNA polymerase II subunit B | RPB2 | universal, Sordariomycetes, Cladonia, Inocybe | Matheny 2005; Pino-Bodas et al. 2013; Větrovský et al. 2016; Luo et al. 2019 |
Translation elongation factor 1 alpha | TEF1 | universal, Sordariomycetes, Cantharellus, Fusarium, Trichoderma, Mycetozoa | Buyck and Hofstetter 2011; O'Donnell et al. 2015; Stielow et al. 2015; Schnittler et al. 2017; Luo et al. 2019 |
hypothetical protein | LNS2 | Pucciniomycota | Stielow et al. 2015 |
Phosphoglycerate kinase | PGK | Fusarium, Penicillium | |
DNA topoisomerase I | TOP1 | Pucciniomycota, Fusarium, Penicillium | |
Cytochrome c oxidase subunit I | COX1 | Cladonia, Oomycota, Mycetozoa | Pino-Bodas et al. 2013; Choi et al. 2015; Schnittler et al. 2017 |
Cytochrome c oxidase subunit II | COX2 | Oomycota | Choi et al. 2015 |