Validation of Fuscoporia (Hymenochaetales, Basidiomycota) ITS sequences and five new species based on multi-marker phylogenetic and morphological analyses

Cho, Yoonhee; Kim, Dohye; Lee, Yoongil; Jeong, Juhwan; Hussain, Shahid; Lim, Young Woon

doi:10.1186/s43008-023-00117-6

Table 1 List of Fuscoporia specimens and GenBank accessions of ITS, nrLSU, rpb2, and tef1 sequences analyzed

From: Validation of Fuscoporia (Hymenochaetales, Basidiomycota) ITS sequences and five new species based on multi-marker phylogenetic and morphological analyses

Species	Specimen voucher	Country (research article)	Accession				References	Remarks
Species	Specimen voucher	Country (research article)	ITS	nrLSU	rpb2	tef1	References	Remarks
F. acutimarginata	Dai 15137	China	MH050751	MH050765	MN159384	MN848821	Chen and Dai (2019)
F. acutimarginata	Dai 16892	China	MH050752	MH050766	MH079393	MN848822	Chen and Dai (2019)
F. ambigua	Dai 16030	USA	MN816704	MN809994	MN848790	MN848803	Chen et al. (2020)	1. Annotated as Fuscoporia sp. in GenBank 2. Country annotated as China in GenBank for ITS
F. ambigua	JV 0509/151	USA	MN816707	MN809996	MN848792		Chen et al. (2020)	1. Misannotated as Fuscoporia ferruginosa in GenBank 2. Country annotated as China in GenBank for ITS
F. americana	JV 1209/100	USA	KJ940022	MG008467		MH636384	Du et al. (2020)	Annotated as Fuscoporia sp. in GenBank
F. australasica	Dai 15625	China	MN816726	MN810018	MN848775	MN848829	Chen et al. (2020)	Annotated as Fuscoporia sp. in GenBank
	Dai 15636	China	MG008397	MG008450	MH079402	MH636408	Chen and Dai (2019)
	Dai 15659	China	MG008398	MG008451	MH079403	MH636409	Chen and Dai (2019)
F. australiana	Dai 18587A	Australia	MN816723	MN810013	MN848765	MN848849	Chen et al. (2020)
	Dai 18672	Australia	MN816703	MN810014	MN848766	MN848848	Chen et al. (2020)	Country annotated as USA in GenBank for ITS
	Dai 18879	Australia	MN816705	MN810015	MN848767	MN848850	Chen et al. (2020)	Country annotated as USA in GenBank for ITS
F. bambusae	Dai 16599	Thailand	MN816711	MN809999		MN848808	Chen et al. (2020)	Country annotated as China in GenBank for ITS
	Dai 16607	Thailand	MN816713	MN810000	MN848797	MN848809	Chen et al. (2020)	Country annotated as China in GenBank for ITS
	Dai 16615	Thailand	MN816715	MN810001		MN848810	Chen et al. (2020)	Country annotated as USA in GenBank for ITS
F. bambusicola	Cui 8692	China	MN816739	MT032486		MN848813	Chen et al. (2020)
F. callimorpha	Doll 868		MN816701	MN809992		MN848840	Chen et al. (2020)
F. callimorpha	SFC20160128-06	Federated States of Micronesia	ON427767	ON427796	ON479778	ON479804	This study
F. caymanensis	JV 1408/5	French Guiana	MW009110	MW009109			Vlasak et al. (2020)
F. caymanensis	JV 1908/74	French Guiana	MT676832	MT676833			Vlasak et al. (2020)
F. chinensis	Cui 11209	China	MN121826	MN121767	MN159388		Chen and Dai (2019)	Annotated as Fuscoporia gilva in GenBank
	Dai 15713	China	MN816721	MN810008	MN848771	MN848846	Chen et al. (2020)
	Dai 17282	China	MN816710	MN810009	MN848772	MN848847	Chen et al. (2020)	Country annotated as Thailand in GenBank for ITS
F. contigua	Dai 16025	USA	MG008401		MH079406	MH636386	Chen and Dai (2019)
F. contigua	JV 1204/22.3a,b-J	USA	KX961104	KY189104	MH079407		Chen and Yuan (2017)	Strain annotated as JV 1204/22 3 J for rpb2
F. dolichoseta	SFC20140723-58	Republic of Korea	ON427788	ON427816	ON479797	ON479820	This study
	SFC20161006-16	Republic of Korea	ON427789	ON427817	ON479798	ON479821	This study
	SFC20190731-26	Republic of Korea	ON427790	ON427818	ON479799		This study
	SFC20191015-23	Republic of Korea	ON427765	ON427795	ON464731		This study
F. eucalypti	Dai 18634A	Australia	MN816729	MN810020	MN848777	MN848830	Chen et al. (2020)
	Dai 18783	Australia	MN816730	MN810021	MN848776	MN848832	Chen et al. (2020)
	Dai 18792	Australia	MN816731	MN810022		MN848831	Chen et al. (2020)
F. ferrea	Cui 11801	China	KX961101	KY189101		MN848823	Chen and Yuan (2017)
	FP-133592-Sp	USA	KU139189	KU139259	KU139319	KU139379	Brazee (2015)
	JV 1105/3 J	USA	MH050760	MH050770	MH079392		Chen and Dai (2019)
	JV 1606/2.2-J	USA	KX961100	KY189100	MH079394	MH636402	Chen and Yuan (2017)
F. ferruginosa	Cui 9244	China	MN816706	MN809995		MN848804	Chen et al. (2020)
	Dai 13200	France	MN816702	MN809993	MN848793	MN848802	Chen et al. (2020)
	JV 0408/28	Czech Republic	KX961103	KY189103		MH636397	Chen and Yuan (2017)
	JV 1309/4	Slovakia	KX961102	KY189102	MH079405	MH636398	Chen and Yuan (2017)
F. gilva	CMW47749	South Africa	MH599106	MH599129		MT108963	Tchoumi et al. (2020)
	CMW48145	South Africa	MH599105	MH599130		MT108962	Tchoumi et al. (2020)
	JV 0709/75	USA	MN816720	MN810007		MN848852	Chen et al. (2020)	Country annotated as Australia in GenBank for ITS
	JV 1209/65	USA	MN816719	MN810006		MN848851	Chen et al. (2020)	Country annotated as Singapore in GenBank for ITS
F. gilvoides	110N	Pakistan	ON427780	ON427809			This study
	MUGBt	Pakistan	ON427781	ON427810	ON479791	ON479814	This study
	MUKM-2	Pakistan	ON427782	ON427811	ON479792		This study
	SFC20150702-23	Republic of Korea	ON427783		ON479793	ON479815	This study
	SFC20160621-12	Republic of Korea	ON427784	ON427812	ON479794	ON479816	This study
	SFC20160629-33	Republic of Korea	ON427785	ON427813	ON479795	ON479817	This study
	SFC20180426-12	Republic of Korea	ON427763	ON427793	ON464729	ON479802	This study
	SFC20180905-15	Republic of Korea	ON427786	ON427814	ON479796	ON479818	This study
F. insolita	JV 1208/5208-Spirin	Russia	MN816724	MN810016		MN848800	Chen et al. (2020)	1. Strain annotated as Spirin 5208 in the reference article 2. Accessions for ITS and nrLSU switched in the reference article
F. karsteniana	Dai 11403	China	MN816717	MN810003	MN848795	MN848807	Chen et al. (2020)
	Dai 15717	China	MN816718	MN810004		MN848805	Chen et al. (2020)	Country annotated as Australia in GenBank for ITS
	Dai 16552	China	MN816716	MN810002	MN848794	MN848806	Chen et al. (2020)
F. koreana	SFC20150625-05	Republic of Korea	ON427776	ON427805	ON479787	ON479810	This study
	SFC20150625-07	Republic of Korea	ON427777	ON427806	ON479788	ON479811	This study
	SFC20160726-93	Republic of Korea	ON427762	ON427792	ON464728	ON479801	This study
	SFC20171019-11	Republic of Korea	ON427778	ON427807	ON479789	ON479812	This study
	SFC20180725-17	Republic of Korea	ON427779	ON427808	ON479790	ON479813	This study
F. latispora	JV 0610/VIIK1	Mexico	MG008436	MG008469		MH636396	Du et al. (2020)	1. Annotated as Fuscoporia sp. in GenBank 2. Strain annotated as JV 0610/VII-Kout in the reference article
F. latispora	JV 1109/482	USA	MG008439	MG008468	MN848799	MH636395	Du et al. (2020)	1. Annotated as Fuscoporia sp. in GenBank 2. Strain annotated as JV 1109/48 in the reference article
F. monticola	Dai 11860	China	MG008406	MG008457		MH636390	Du et al. (2020)	Annotated as Fuscoporia sp. in GenBank for ITS
F. palomari	JV 1305/3-J	USA	MN816738	MN810028		MN848801	Chen et al. (2020)
F. plumeriae	Dai 17814	Singapore	MN816714	MN810011		MN848845	Chen et al. (2020)	Country annotated as USA in GenBank for ITS
	Dai 18820	Australia	MN816722	MN810012	MN848770	MN848844	Chen et al. (2020)
	Dai 18858	Australia	MN816712	MN810010	MN848769	MN848843	Chen et al. (2020)	Country annotated as China in GenBank for ITS
F. pulviniformis	CMW45308	South Africa	MH599100	MH599124		MT108958	Tchoumi et al. (2020)
	CMW47816	South Africa	MH599101	MH599125		MT108959	Tchoumi et al. (2020)
	CMW48060	South Africa	MH599103	MH599126		MT108961	Tchoumi et al. (2020)
	CMW48600	South Africa	MH599102	MH599127		MT108960	Tchoumi et al. (2020)
	Dai 17255	China	MH050747	MH050761	MH079396		Chen and Dai (2019)
F. ramulicola	Dai 15723	China	MH050749	MH050762	MH079398	MN848824	Chen and Dai (2019)
F. ramulicola	Dai 16155	China	MH050750	MH050763	MH079399	MN848825	Chen and Dai (2019)
F. reticulata	SFC20121010-19	Republic of Korea	ON427766				This study
F. reticulata	SFC20160115-16	Republic of Korea	ON427761	ON427791	ON464727	ON479800	This study
F. rhabarbarina	Dai 16226	China	MN816743	MN810035	MN848784	MN848838	Chen et al. (2020)	Annotated as Phellinus rhabarbarinus in GenBank
F. rhabarbarina	Dai 16550	China	MN816744	MN810036	MN848785	MN848836	Chen et al. (2020)	Annotated as Phellinus rhabarbarinus in GenBank
F. roseocinerea	JV 1109/78-J	USA	MN816742	MN810032		MN848820	Chen et al. (2020)	Strain annotated as JV 1109/78 in the reference article
F. roseocinerea	JV 1407/84	Costa Rica	MN816740	MN810030		MN848819	Chen et al. (2020)
F. semicephala	SFC20170524-08	Republic of Korea	ON427764	ON427794	ON464730	ON479803	This study
F. semicephala	SFC20170712-20	Republic of Korea	ON427787	ON427815		ON479819	This study
F. senex	Dai 15775	China	MN816746	MN810038	MN848787	MN848834	Chen et al. (2020)
	Dai 17043	China	MN816747	MN810039	MN848786	MN848835	Chen et al. (2020)
	Dai 17132	China	MN816745	MN810037	MN848783	MN848833	Chen et al. (2020)	Specimen information not found in the reference article
F. septiseta	Dai 12820	USA	MG008405	MN810033		MH636394	Chen et al. (2019)	Annotated as Fuscoporia sp. in GenBank for ITS
F. setifera	Dai 15706	China	MH050759	MH050769	MN159391	MN848842	Chen and Dai (2019)
F. setifera	Dai 15710	China	MH050758	MH050767	MN159390	MN848841	Chen and Dai (2019)
F. shoreae	Dai 17800	Singapore	MN816733	MN810024		MN848814	Chen et al. (2020)	Annotated as Fuscoporia sp. in GenBank
	Dai 17806	Singapore	MN816734	MN810025		MN848815	Chen et al. (2020)	Annotated as Fuscoporia sp. in GenBank
	Dai 17818	Singapore	MN816735	MN810026		MN848816	Chen et al. (2020)	Annotated as Fuscoporia sp. in GenBank
F. sinica	Dai 15468	China	MG008412	MG008459		MH636392	Chen et al. (2019)	Annotated as Fuscoporia sp. in GenBank for ITS and nrLSU
F. sinica	Dai 15489	China	MG008407	MG008458	MN848798	MH636393	Chen et al. (2019)	Annotated as Fuscoporia sp. in GenBank for ITS and nrLSU
F. subchrysea	Dai 16201	China	MN816708	MN809997	MN848796	MN848811	Chen et al. (2020)	Country annotated as Thailand in GenBank for ITS
F. subchrysea	Dai 17656	China	MN816709	MN809998		MN848812	Chen et al. (2020)	Country annotated as Thailand in GenBank for ITS
F. subferrea	Dai 16326	China	KX961097	KY053472	MH079400	MN848826	Chen and Dai (2019)
F. subferrea	Dai 16327	China	KX961098	KY053473	MH079401		Chen and Dai (2019)
F. torulosa	Dai 15518	China	MN816732	MN810023	MN848781	MN848827	Chen et al. (2020)
	JV 1312/19-Kout	Spain	KX961107	KY189107		MH636406	Chen and Dai (2019)
	JV 1405/2	Czech Republic	KX961106	KY189106		MH636405	Chen and Dai (2019)
F. viticola	He 2081	USA	MN121829	MN121770			Chen and Dai (2019)
F. viticola	He 2123	USA	MN816725	MN810017			Chen et al. (2020)
F. yunnanensis	Cui 8182	China	MH050756	MN810029	MN848789		Chen and Dai (2019)

Type-derived sequences are in bold, and type locality-derived sequences are indicated by an italic

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ISSN: 2210-6359

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