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Table 2 Features of introns and intronic ORFs characterized in the C. blackwelliae mitogenome

From: Mitochondrial genome of Cordyceps blackwelliae: organization, transcription, and evolutionary insights into Cordyceps

Intron/intronic ORF

Start

End

Length (bp)

Type

Standard name

Start codon

Stop codon

IEP†

rnl-i1

815

2327

1513

IC1

mL965

   

orf103

1594

1905

312

  

AUU

UAG

G

rnl-i2

3982

5805

1824

IA

mL2450

   

orf456

4270

5640

1371

  

AUG

UAA

R

rnl-i3

5943

7005

1063

IA

mL2585

   

orf102

6227

6535

309

  

UUA

UAA

L

nad5-i1

14,342

16,294

1953

IB

nad5P924

   

orf386

14,342

15,502

1161

  

ND

UAA

L

cob-i1

18,029

19,089

1061

IB

cobP506

   

orf319

18,030

18,989

960

  

ND

UAA

L

cox1-i1

20,548

21,818

1271

IB

cox1P281

   

orf301

20,549

21,454

906

  

ND

UAA

L

cox1-i2

22,258

24,129

1872

IB

cox1P720

   

orf535

22,485

24,092

1608

  

AUG

UAA

H

cox1-i3

24,141

25,239

1099

IB (3')

cox1P731

   

orf336

24,148

25,158

1011

  

AUA

UAA

L

cox1-i4

25,566

26,837

1272

IB

cox1P1057

   

orf129

25,568

25,957

390

  

AUA

UAA

H

orf112

26,490

26,828

339

  

AUG

UAA

G

nad1-i1

29,467

30,447

981

IB

nad1P636

   

nad4-i1

31,548

32,246

699

IC2

nad4P505

   

orf127B

31,550

31,933

384

  

ND

UAA

H

cox3-i1

36,817

37,951

1135

IB

cox3P219

   

orf308

36,817

37,743

927

  

ND

UAA

L

cox3-i2

38,066

39,347

1282

IC2

cox3P333

   

orf419

38,066

39,325

1260

  

ND

UAA

L

cox3-i3

39,646

40,773

1128

I*

cox3P631

   
  1. †IEP, intron encoded protein. G, GIY-YIG endonuclease; L, LAGLIDADG endonuclease; R, ribosomal protein; H, hypothetical protein