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Table 3 Statistical information of the different phylogenetic analyses performed on each Colletotrichum complex

From: Identification, prevalence and pathogenicity of Colletotrichum species causing anthracnose of Capsicum annuum in Asia

Dataset Parameters and statistics of the Bayesian analyses Total number of generations run
Substitution models (Number of Unique site patterns) Number of trees used in consensus
ITS gapdh tub2 act chs-1 his3 ApMat gs
acutatum complex HKY + I (108) SYM + G (151) GTR + G (134) GTR + G (86) K80 + I (54) GTR + G (96)    45,602 3,040,000
boninense complex HKY + I (42) HKY (130) HKY + G (111) HKY + G (94) HKY + G (55)     12,002 80,000
gloeosporioides complex, 2-gene        HKY + G (520) GTR + G (432) 442,502 29,500,000
gloeosporioides complex, 5-gene SYM + I (73) HKY + G (163) SYM + I (180) HKY + I (85) K80 + G (55)     102,752 685,000
orchidearum complex GTR + I (34) HKY (55) HKY (90) HKY (42)      4128 275,000
  Statistics of the parsimony analyses  
  Number of strains (incl. Outgroup(s)) Number of included characters Number of parsimony-informative characters Number of parsimony-uninformative characters Number of constant characters Tree Length (TL) Consistency index (CI) Retention index (RI) Rescaled consistency index (RC) Number of equally most parsimonious trees saved
acutatum complex 100 2210 282 438 1490 1190 0.76 0.79 0.6 1000
boninense complex 24 1743 189 343 1211 776 0.87 0.79 0.68 3
gloeosporioides complex, 2-gene 92 1715 559 539 617 2003 0.73 0.88 0.64 161
gloeosporioides complex, 5-gene 85 1724 306 222 1196 926 0.71 0.857 0.610 1000
orchidearum complex 26 1417 72 282 1063 411 0.92 0.85 0.78 284