Table 3 Statistical information of the different phylogenetic analyses performed on each Colletotrichum complex
Dataset | Parameters and statistics of the Bayesian analyses | Total number of generations run | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Substitution models (Number of Unique site patterns) | Number of trees used in consensus | |||||||||
ITS | gapdh | tub2 | act | chs-1 | his3 | ApMat | gs | |||
acutatum complex | HKY + I (108) | SYM + G (151) | GTR + G (134) | GTR + G (86) | K80 + I (54) | GTR + G (96) |  |  | 45,602 | 3,040,000 |
boninense complex | HKY + I (42) | HKY (130) | HKY + G (111) | HKY + G (94) | HKY + G (55) |  |  |  | 12,002 | 80,000 |
gloeosporioides complex, 2-gene |  |  |  |  |  |  | HKY + G (520) | GTR + G (432) | 442,502 | 29,500,000 |
gloeosporioides complex, 5-gene | SYM + I (73) | HKY + G (163) | SYM + I (180) | HKY + I (85) | K80 + G (55) |  |  |  | 102,752 | 685,000 |
orchidearum complex | GTR + I (34) | HKY (55) | HKY (90) | HKY (42) |  |  |  |  | 4128 | 275,000 |
| Â | Statistics of the parsimony analyses | Â | ||||||||
| Â | Number of strains (incl. Outgroup(s)) | Number of included characters | Number of parsimony-informative characters | Number of parsimony-uninformative characters | Number of constant characters | Tree Length (TL) | Consistency index (CI) | Retention index (RI) | Rescaled consistency index (RC) | Number of equally most parsimonious trees saved |
acutatum complex | 100 | 2210 | 282 | 438 | 1490 | 1190 | 0.76 | 0.79 | 0.6 | 1000 |
boninense complex | 24 | 1743 | 189 | 343 | 1211 | 776 | 0.87 | 0.79 | 0.68 | 3 |
gloeosporioides complex, 2-gene | 92 | 1715 | 559 | 539 | 617 | 2003 | 0.73 | 0.88 | 0.64 | 161 |
gloeosporioides complex, 5-gene | 85 | 1724 | 306 | 222 | 1196 | 926 | 0.71 | 0.857 | 0.610 | 1000 |
orchidearum complex | 26 | 1417 | 72 | 282 | 1063 | 411 | 0.92 | 0.85 | 0.78 | 284 |