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Table 4 PCR amplification size, phylogenetic data and the substitution models used in the phylogenetic analysis for each gene region and for the combined datasets

From: Biodiversity of Lecanosticta pine-needle blight pathogens suggests a Mesoamerican Centre of origin

  ITS TEF1 BT1 MS204 RPB2 Combined datasets
Approximate amplicon size (bp) 550 520 420 760 940
Number of taxa analysed 153 147 111 91 105 76
Aligned characters (bp) 734 586 440 785 929 3344
Number of parsimony-uninformative characters 621 143 357 519 538 2438
Number of parsimony-informative characters 114 423 82 266 371 1121
Number of trees retained 108 396 1 2448 420 100
Consistency index 0.865 0.499 0.739 0.791 0.738 0.607
Homoplasy index 0.135 0.501 0.261 0.209 0.262 0.393
Rescaled consistency index 0.850 0.459 0.703 0.748 0.696 0.555
Retention index 0.982 0.919 0.951 0.946 0.943 0.914
Tree Length 163 1675 138 546 722 2642
Substitution model TPM2uf + G GTR + G GTR + G TVM + G TrN + G GTR + G