Table 1 Features of the Botryosphaeria dothidea LW-Hubei isolate genome
Features | B. dothidea LW-Hubei isolate | |
|---|---|---|
Assembly statistics | Size (Mb) | 46.34 |
HiSeq data (coverage) | 6835 Mb (147×) | |
PacBio data (coverage) | 3721 Mb (80×) | |
Total contig numbers (length) | 68 (46,328,675 bp) | |
Total scaffold number (length) | 49 (46,346,907 bp) | |
N50 contig (bp) | 2,722,300 | |
N50 scaffold (bp) | 3,265,504 | |
G + C content (%) | 54.27 | |
Chromosome no. | 0 | |
Genome components | Protein-coding gene numbers (Length/genome length) | 14,091 (51.21%) |
Average gene length (bp) | 1684 | |
Gene density (#gene per Mb) | 304 | |
Exons numbers (length/genome length) | 43,305 (43.89%) | |
Exons/gene | 3.07 | |
Average exon length (bp) | 469.68 | |
Intron numbers (length/genome length) | 29,214 bp (7.33%) | |
Introns/gene | 2.07 | |
Average intron length (bp) | 116.26 | |
ncRNA | 465 | |
tRNA genes | 137 | |
TEs and repeat size and % in genome | 4.31 Mb and 9.3% | |