Table 2 The percentage of different types of repetitive elements in the Botryosphaeria dothidea LW-Hubei isolate genome
Repeat elements | Method | Type | DNA | LINE | LTR | SINE | unknown | Tandem Repeat | Total |
|---|---|---|---|---|---|---|---|---|---|
TE | Repbase TEs | Length (bp) | 124,634 | 528,773 | 906,058 | 1962 | 1856 | – | 1,546,903 |
% of genome | 0.2689 | 1.140 | 1.9549 | 0.0042 | 0.004 | – | 3.3377 | ||
Protein Mask TEs | Length (bp) | 159,623 | 931,118 | 1,525,603 | 0 | 0 | – | 2,613,914 | |
% of genome | 0.3444 | 2.009 | 3.2917 | 0 | 0 | – | 5.6399 | ||
De novo TEs | Length (bp) | 82,280 | 1,122,469 | 2,001,497 | 0 | 602,412 | – | 3,796,845 | |
% of genome | 0.1775 | 2.4219 | 4.3185 | 0 | 1.2998 | – | 8.1922 | ||
Combined TEs | Length (bp) | 216,254 | 1,216,468 | 2,132,909 | 1962 | 604,268 | – | 4,089,081 | |
% of genome | 0.4666 | 2.6247 | 4.6021 | 0.0042 | 1.3038 | – | 8.8228 | ||
TR | TRF | Length (bp) | – | – | – | – | – | 307,386 | 307,386 |
% of genome | – | – | – | – | – | 0.6632 | 0.6632 | ||
Repeat sequences | Total | Length (bp) | – | – | – | – | – | 4,309,902 | |
% of genome | – | – | – | – | – | 9.2992 |