Skip to main content

Table 3 The sRNA annotation of the Mock, LW-P, LW-C and LW-CP libraries constructed from the Botryosphaeria dothidea LW-Hubei strain

From: Comprehensive analysis of full genome sequence and Bd-milRNA/target mRNAs to discover the mechanism of hypovirulence in Botryosphaeria dothidea strains on pear infection with BdCV1 and BdPV1

 MockLW-PLW-CLW-CP
Unique sRNA reads (%)Total sRNA reads (%)Unique sRNA reads (%)Total sRNA reads (%)Unique sRNA reads (%)Total sRNA reads (%)Unique sRNA reads (%)Total sRNA reads (%)
Total1,052,904 (100%)10,880,651 (100%)1,047,920 (100%)10,949,651 (100%)947,838 (100%)11,837,018 (100%)1,223,398 (100%)11,221,049 (100%)
exon_antisense7312 (0.69%)13,835 (0.13%)5689 (0.54%)9833 (0.09%)1184 (0.12%)3168 (0.03%)3037 (0.25%)7638 (0.07%)
exon_sense76,375 (7.25%)95,458 (0.88%)40,633 (3.88%)48,843 (0.45%)26,314 (2.78%)32,399 (0.27%)50,639 (4.14%)61,294 (0.55%)
intron_antisense3253 (0.31%)13,331 (0.12%)1635 (0.16%)4160 (0.04%)478 (0.05%)2592 (0.02%)925 (0.08%)2793 (0.02%)
intron_sense6753 (0.64%)20,665 (0.19%)3482 (0.33%)24,179 (0.22%)2379 (0.25%)13,418 (0.11%)4172 (0.34%)34,456 (0.31%)
miRNA13,276 (1.26%)278,093 (2.56%)14,568 (1.39%)267,681 (2.44%)16,364 (1.73%)229,446 (1.94%)16,098 (1.32%)264,274 (2.36%)
rRNA76,021 (7.22%)527,959 (4.85%)81,074 (7.7.4%)532,555 (4.86%)72,983 (7.70%)599,461 (5.06%)86,945 (7.11%)826,302 (7.36%)
repeat129,247 (12.28%)4,444,540 (40.85%)71,670 (6.84%)898,130 (8.20%)23,718 (2.50%)98,207 (0.83%)40,975 (3.35%)218,227 (1.94%)
snRNA638 (0.06%)2020 (0.02%)651 (0.06%)2344 (0.02%)537 (0.06%)2608 (0.02%)831 (0.07%)3544 (0.03%)
snoRNA296 (0.03%)1787 (0.02%)231 (0.02%)1617 (0.01%)274 (0.03%)1619 (0.01%)282 (0.02%)1665 (0.01%)
tRNA2963 (0.28%)40,722 (0.37%)3371 (0.32%)74,633 (0.68%)4866 (0.51%)75,363 (0.64%)4586 (0.37%)129,076 (1.15%)
unannnation736,770 (69.98%)5,442,241 (50.02%)824,916 (78.72%)9,085,676 (82.98%)798,741 (84.27%)10,778,737 (91.06%)1,014,908 (82.96%)9,671,780 (86.19%)