Table 3 The sRNA annotation of the Mock, LW-P, LW-C and LW-CP libraries constructed from the Botryosphaeria dothidea LW-Hubei strain
| Â | Mock | LW-P | LW-C | LW-CP | ||||
|---|---|---|---|---|---|---|---|---|
Unique sRNA reads (%) | Total sRNA reads (%) | Unique sRNA reads (%) | Total sRNA reads (%) | Unique sRNA reads (%) | Total sRNA reads (%) | Unique sRNA reads (%) | Total sRNA reads (%) | |
Total | 1,052,904 (100%) | 10,880,651 (100%) | 1,047,920 (100%) | 10,949,651 (100%) | 947,838 (100%) | 11,837,018 (100%) | 1,223,398 (100%) | 11,221,049 (100%) |
exon_antisense | 7312 (0.69%) | 13,835 (0.13%) | 5689 (0.54%) | 9833 (0.09%) | 1184 (0.12%) | 3168 (0.03%) | 3037 (0.25%) | 7638 (0.07%) |
exon_sense | 76,375 (7.25%) | 95,458 (0.88%) | 40,633 (3.88%) | 48,843 (0.45%) | 26,314 (2.78%) | 32,399 (0.27%) | 50,639 (4.14%) | 61,294 (0.55%) |
intron_antisense | 3253 (0.31%) | 13,331 (0.12%) | 1635 (0.16%) | 4160 (0.04%) | 478 (0.05%) | 2592 (0.02%) | 925 (0.08%) | 2793 (0.02%) |
intron_sense | 6753 (0.64%) | 20,665 (0.19%) | 3482 (0.33%) | 24,179 (0.22%) | 2379 (0.25%) | 13,418 (0.11%) | 4172 (0.34%) | 34,456 (0.31%) |
miRNA | 13,276 (1.26%) | 278,093 (2.56%) | 14,568 (1.39%) | 267,681 (2.44%) | 16,364 (1.73%) | 229,446 (1.94%) | 16,098 (1.32%) | 264,274 (2.36%) |
rRNA | 76,021 (7.22%) | 527,959 (4.85%) | 81,074 (7.7.4%) | 532,555 (4.86%) | 72,983 (7.70%) | 599,461 (5.06%) | 86,945 (7.11%) | 826,302 (7.36%) |
repeat | 129,247 (12.28%) | 4,444,540 (40.85%) | 71,670 (6.84%) | 898,130 (8.20%) | 23,718 (2.50%) | 98,207 (0.83%) | 40,975 (3.35%) | 218,227 (1.94%) |
snRNA | 638 (0.06%) | 2020 (0.02%) | 651 (0.06%) | 2344 (0.02%) | 537 (0.06%) | 2608 (0.02%) | 831 (0.07%) | 3544 (0.03%) |
snoRNA | 296 (0.03%) | 1787 (0.02%) | 231 (0.02%) | 1617 (0.01%) | 274 (0.03%) | 1619 (0.01%) | 282 (0.02%) | 1665 (0.01%) |
tRNA | 2963 (0.28%) | 40,722 (0.37%) | 3371 (0.32%) | 74,633 (0.68%) | 4866 (0.51%) | 75,363 (0.64%) | 4586 (0.37%) | 129,076 (1.15%) |
unannnation | 736,770 (69.98%) | 5,442,241 (50.02%) | 824,916 (78.72%) | 9,085,676 (82.98%) | 798,741 (84.27%) | 10,778,737 (91.06%) | 1,014,908 (82.96%) | 9,671,780 (86.19%) |