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Table 1 Genome statistics of Tilletia strains compared in this study

From: Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat

  T. indica T. indica T. indica T. walkeri T. walkeri T. controversa T. controversa T. caries T. laevis T. laevis
DAOMC culture number DAOMC 236408 DAOMC 236414 DAOMC 236416 DAOMC 236422 DAOMC 238049 DAOMC 236426 DAOMC 238052 DAOMC 238032 DAOMC 238040 ATCC 42080
Isolation source Triticum Triticum Triticum Lolium Lolium Triticum Triticum Triticum Triticum Triticum
Isolation location India Pakistan Pakistan Oregon, USA Oregon, USA Ontario, Canada Ontario, Canada Idaho, USA Australia Washington, USA
Sequencing method Illumina MiSeq Illumina MiSeq Illumina HiSeq Illumina HiSeq Illumina MiSeq Illumina HiSeq, MiSeq, PacBio Illumina MiSeq Illumina HiSeq Illumina MiSeq Illumina MiSeq
Number of scaffolds 2555 4624 3113 1387 907 3741 4243 4633 4501 3961
Largest scaffold size (bp) 158,844 75,904 161,394 260,724 330,910 114,021 81,512 72,392 101,287 101,260
N50 in scaffolds 30,694 11,729 23,649 45,552 79,486 14,874 12,786 11,482 11,569 13,920
Gaps per 100 kb 41.79 14.33 54.93 22.62 20.08 96.12 43.23 80.78 101.48 31.02
GC (%) in scaffolds 54.8 55.0 54.9 54.9 54.9 56.5 56.7 56.7 56.6 56.6
Total length (Mb) in scaffolds 29.7 29.0 29.0 24.0 24.3 29.9 28.6 28.1 28.3 28.8
Coveragea 51x 45x 38x 75x 46x 67x 45x 52x 67x 35x
Number of gene models 9410 9677 9664 7881 7842 9887 9649 9952 9651 9799
BUSCO (complete single copy)b 98% 93% 96% 97% 98% 95% 96% 92% 93% 95%
  1. aDetermined by mapping reads with Bowtie2 and analysis with Qualimap v2.1
  2. bBUSCO analysis on scaffolds ≥1000 bp running on the fungal dataset