Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat

Table 1 Genome statistics of Tilletia strains compared in this study

	T. indica	T. indica	T. indica	T. walkeri	T. walkeri	T. controversa	T. controversa	T. caries	T. laevis	T. laevis
DAOMC culture number	DAOMC 236408	DAOMC 236414	DAOMC 236416	DAOMC 236422	DAOMC 238049	DAOMC 236426	DAOMC 238052	DAOMC 238032	DAOMC 238040	ATCC 42080
Isolation source	Triticum	Triticum	Triticum	Lolium	Lolium	Triticum	Triticum	Triticum	Triticum	Triticum
Isolation location	India	Pakistan	Pakistan	Oregon, USA	Oregon, USA	Ontario, Canada	Ontario, Canada	Idaho, USA	Australia	Washington, USA
Sequencing method	Illumina MiSeq	Illumina MiSeq	Illumina HiSeq	Illumina HiSeq	Illumina MiSeq	Illumina HiSeq, MiSeq, PacBio	Illumina MiSeq	Illumina HiSeq	Illumina MiSeq	Illumina MiSeq
Number of scaffolds	2555	4624	3113	1387	907	3741	4243	4633	4501	3961
Largest scaffold size (bp)	158,844	75,904	161,394	260,724	330,910	114,021	81,512	72,392	101,287	101,260
N50 in scaffolds	30,694	11,729	23,649	45,552	79,486	14,874	12,786	11,482	11,569	13,920
Gaps per 100 kb	41.79	14.33	54.93	22.62	20.08	96.12	43.23	80.78	101.48	31.02
GC (%) in scaffolds	54.8	55.0	54.9	54.9	54.9	56.5	56.7	56.7	56.6	56.6
Total length (Mb) in scaffolds	29.7	29.0	29.0	24.0	24.3	29.9	28.6	28.1	28.3	28.8
Coverage^a	51x	45x	38x	75x	46x	67x	45x	52x	67x	35x
Number of gene models	9410	9677	9664	7881	7842	9887	9649	9952	9651	9799
BUSCO (complete single copy)^b	98%	93%	96%	97%	98%	95%	96%	92%	93%	95%

ISSN: 2210-6359