Table 2 List of genomes used for phylogenetic analysis in current study
Phylum | Name | Source of Genome Data | Reference |
|---|---|---|---|
Basidiomycota | Acaromyces ingoldii MCA 4198 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Agaricus bisporus var. bisporus H97 v2.0 | JGI MycoCosm | Morin et al. 2012 |
Basidiomycota | Auricularia subglabra v2.0 | JGI MycoCosm | Floudas et al. 2012 |
Basidiomycota | Ceraceosorus guamensis MCA 4658 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Cystobasidiopsis lactophilus JCM 7595 | NCBI (BCIO01000001.1) a | Manabe et al. unpublished |
Basidiomycota | Exobasidium vaccinii MPITM v1.0 | JGI MycoCosm | Spatafora et al. unpublished |
Basidiomycota | Golubevia pallescens JCM 5230 | NCBI (BCHO01000001.1) a | Manabe et al. unpublished |
Basidiomycota | Jaminaea sp. MCA 5214 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Malassezia globosa | JGI MycoCosm | Xu et al. 2007 |
Basidiomycota | Malassezia sympodialis ATCC 42132 | JGI MycoCosm | Gioti et al. 2013 |
Basidiomycota | Meira miltonrushii MCA 3882 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Meira nashicola JCM 18503 | NCBI (BCJU01000001.1) a | Manabe et al. unpublished |
Basidiomycota | Melanotaenium endogenum CBS 481.91 v1.0 | JGI MycoCosm | Spatafora et al. unpublished |
Basidiomycota | Mixia osmundae IAM 14324 v1.0 | JGI MycoCosm | Toome et al. 2014b |
Basidiomycota | Moesziomyces antarcticus DSM 70725 | JGI MycoCosm | Lorenz et al. 2014 |
Basidiomycota | Moesziomyces aphidis DSM 70725 | JGI MycoCosm | Lorenz et al. 2014 |
Basidiomycota | Pseudozyma hubeiensis SY62 | JGI MycoCosm | Konishi et al. 2013 |
Basidiomycota | Pseudozyma tsukubaensis NBRC 1940 | NCBI (MAIP00000000.1) a | Geiser et al. 2016 |
Basidiomycota | Puccinia striiformis f. sp. tritici PST-130 | JGI MycoCosm | Cantu et al. 2011 |
Basidiomycota | Sporisorium iseilematis-ciliati BRIP 60887 | NCBI (MJEU00000000.1) a | Geiser et al. 2016 |
Basidiomycota | Sporisorium reilianum SRZ2 | JGI MycoCosm | Schirawski et al. 2010 |
Basidiomycota | Sporisorium scitamineum SSC39B | NCBI (CP010913.1) a | Taniguti et al. 2015 |
Basidiomycota | Testicularia cyperi MCA 3645 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Tilletia caries DAOMC 238032 | Â | current study |
Basidiomycota | Tilletia controversa DAOMC 236426 | Â | current study |
Basidiomycota | Tilletia controversa DAOMC 238052 | Â | current study |
Basidiomycota | Tilletia horrida QB-1 | NCBI (LAXH01000001.1) a | Wang et al. 2015 |
Basidiomycota | Tilletia indica DAOMC 236408 | Â | current study |
Basidiomycota | Tilletia indica DAOMC 236414 | Â | current study |
Basidiomycota | Tilletia indica DAOMC 236416 | Â | current study |
Basidiomycota | Tilletia laevis ATCC 42080 | Â | current study |
Basidiomycota | Tilletia laevis DAOMC 238040 | Â | current study |
Basidiomycota | Tilletia walkeri DAOMC 236422 | Â | current study |
Basidiomycota | Tilletia walkeri DAOMC 238049 | Â | current study |
Basidiomycota | Tilletiaria anomala UBC 951 v1.0 | JGI MycoCosm | Toome et al. 2014a |
Basidiomycota | Tilletiopsis washingtonensis MCA 4186 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Tremella mesenterica Fries v1.0 | JGI MycoCosm | Floudas et al. 2012 |
Basidiomycota | Ustilago hordei Uh4857_4 | JGI MycoCosm | Laurie et al. 2012 |
Basidiomycota | Ustilago maydis 521 v2.0 | JGI MycoCosm | Kämper et al. 2006 |
Basidiomycota | Violaceomyces palustris SA 807 v1.0 | JGI MycoCosm | Kijpornyongpan et al. 2018 |
Basidiomycota | Wallemia ichthyophaga EXF-994 | JGI MycoCosm | Zajc et al. 2013 |
Ascomycota | Neurospora crassa OR74A v2.0 | JGI MycoCosm | Galagan et al. 2003 |
Ascomycota | Saccharomyces cerevisiae S288C | JGI MycoCosm | Goffeau et al. 1996 |
Ascomycota | Schizosaccharomyces pombe | JGI MycoCosm | Wood et al. 2002 |
Blastocladiomycota | Allomyces macrogynus ATCC 38327 v1.0 | JGI MycoCosm | Nordberg et al. 2013 |
Blastocladiomycota | Blastocladiella cf. britannica JEL711 | JGI MycoCosm | James et al. unpublished |
Blastocladiomycota | Catenaria anguillulae PL171 v1.0 | JGI MycoCosm | Mondo et al. 2017 |
Chytridiomycota | Gaertneriomyces semiglobifer Barr 43 v1.0 | JGI MycoCosm | James et al. unpublished |
Chytridiomycota | Globomyces pollinis-pini Arg68 v1.0 | JGI MycoCosm | James et al. unpublished |
Chytridiomycota | Neocallimastix californiae G1 v1.0 | JGI MycoCosm | Haitjema et al. 2017 |
Cryptomycota | Rozella allomycis CSF55 v1.0 | JGI MycoCosm | James et al. 2013 |
Mucoromycota | Mortierella elongata AG-77 v2.0 | JGI MycoCosm | Uehling et al. 2017 |
Mucoromycota | Mucor circinelloides CBS 277.49 v2.0 | JGI MycoCosm | Corrochano et al. 2016 |
Mucoromycota | Phycomyces blakesleeanus NRRL1555 v2.0 | JGI MycoCosm | Corrochano et al. 2016 |
Mucoromycota | Rhizophagus irregularis DAOM 181602 v1.0 | JGI MycoCosm | Tisserant et al. 2013 |
Mucoromycota | Rhizopus oryzae v1.0 | JGI MycoCosm | Ma et al. 2009 |
Zoopagomycota | Basidiobolus meristosporus CBS 931.73 v1.0 | JGI MycoCosm | Mondo et al. 2017 |
Zoopagomycota | Coemansia reversa NRRL 1564 v1.0 | JGI MycoCosm | Chang et al. 2015 |
Zoopagomycota | Conidiobolus coronatus NRRL 28638 v1.0 | JGI MycoCosm | Chang et al. 2015 |