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Table 2 List of genomes used for phylogenetic analysis in current study

From: Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat

Phylum Name Source of Genome Data Reference
Basidiomycota Acaromyces ingoldii MCA 4198 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Agaricus bisporus var. bisporus H97 v2.0 JGI MycoCosm Morin et al. 2012
Basidiomycota Auricularia subglabra v2.0 JGI MycoCosm Floudas et al. 2012
Basidiomycota Ceraceosorus guamensis MCA 4658 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Cystobasidiopsis lactophilus JCM 7595 NCBI (BCIO01000001.1) a Manabe et al. unpublished
Basidiomycota Exobasidium vaccinii MPITM v1.0 JGI MycoCosm Spatafora et al. unpublished
Basidiomycota Golubevia pallescens JCM 5230 NCBI (BCHO01000001.1) a Manabe et al. unpublished
Basidiomycota Jaminaea sp. MCA 5214 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Malassezia globosa JGI MycoCosm Xu et al. 2007
Basidiomycota Malassezia sympodialis ATCC 42132 JGI MycoCosm Gioti et al. 2013
Basidiomycota Meira miltonrushii MCA 3882 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Meira nashicola JCM 18503 NCBI (BCJU01000001.1) a Manabe et al. unpublished
Basidiomycota Melanotaenium endogenum CBS 481.91 v1.0 JGI MycoCosm Spatafora et al. unpublished
Basidiomycota Mixia osmundae IAM 14324 v1.0 JGI MycoCosm Toome et al. 2014b
Basidiomycota Moesziomyces antarcticus DSM 70725 JGI MycoCosm Lorenz et al. 2014
Basidiomycota Moesziomyces aphidis DSM 70725 JGI MycoCosm Lorenz et al. 2014
Basidiomycota Pseudozyma hubeiensis SY62 JGI MycoCosm Konishi et al. 2013
Basidiomycota Pseudozyma tsukubaensis NBRC 1940 NCBI (MAIP00000000.1) a Geiser et al. 2016
Basidiomycota Puccinia striiformis f. sp. tritici PST-130 JGI MycoCosm Cantu et al. 2011
Basidiomycota Sporisorium iseilematis-ciliati BRIP 60887 NCBI (MJEU00000000.1) a Geiser et al. 2016
Basidiomycota Sporisorium reilianum SRZ2 JGI MycoCosm Schirawski et al. 2010
Basidiomycota Sporisorium scitamineum SSC39B NCBI (CP010913.1) a Taniguti et al. 2015
Basidiomycota Testicularia cyperi MCA 3645 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Tilletia caries DAOMC 238032   current study
Basidiomycota Tilletia controversa DAOMC 236426   current study
Basidiomycota Tilletia controversa DAOMC 238052   current study
Basidiomycota Tilletia horrida QB-1 NCBI (LAXH01000001.1) a Wang et al. 2015
Basidiomycota Tilletia indica DAOMC 236408   current study
Basidiomycota Tilletia indica DAOMC 236414   current study
Basidiomycota Tilletia indica DAOMC 236416   current study
Basidiomycota Tilletia laevis ATCC 42080   current study
Basidiomycota Tilletia laevis DAOMC 238040   current study
Basidiomycota Tilletia walkeri DAOMC 236422   current study
Basidiomycota Tilletia walkeri DAOMC 238049   current study
Basidiomycota Tilletiaria anomala UBC 951 v1.0 JGI MycoCosm Toome et al. 2014a
Basidiomycota Tilletiopsis washingtonensis MCA 4186 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Tremella mesenterica Fries v1.0 JGI MycoCosm Floudas et al. 2012
Basidiomycota Ustilago hordei Uh4857_4 JGI MycoCosm Laurie et al. 2012
Basidiomycota Ustilago maydis 521 v2.0 JGI MycoCosm Kämper et al. 2006
Basidiomycota Violaceomyces palustris SA 807 v1.0 JGI MycoCosm Kijpornyongpan et al. 2018
Basidiomycota Wallemia ichthyophaga EXF-994 JGI MycoCosm Zajc et al. 2013
Ascomycota Neurospora crassa OR74A v2.0 JGI MycoCosm Galagan et al. 2003
Ascomycota Saccharomyces cerevisiae S288C JGI MycoCosm Goffeau et al. 1996
Ascomycota Schizosaccharomyces pombe JGI MycoCosm Wood et al. 2002
Blastocladiomycota Allomyces macrogynus ATCC 38327 v1.0 JGI MycoCosm Nordberg et al. 2013
Blastocladiomycota Blastocladiella cf. britannica JEL711 JGI MycoCosm James et al. unpublished
Blastocladiomycota Catenaria anguillulae PL171 v1.0 JGI MycoCosm Mondo et al. 2017
Chytridiomycota Gaertneriomyces semiglobifer Barr 43 v1.0 JGI MycoCosm James et al. unpublished
Chytridiomycota Globomyces pollinis-pini Arg68 v1.0 JGI MycoCosm James et al. unpublished
Chytridiomycota Neocallimastix californiae G1 v1.0 JGI MycoCosm Haitjema et al. 2017
Cryptomycota Rozella allomycis CSF55 v1.0 JGI MycoCosm James et al. 2013
Mucoromycota Mortierella elongata AG-77 v2.0 JGI MycoCosm Uehling et al. 2017
Mucoromycota Mucor circinelloides CBS 277.49 v2.0 JGI MycoCosm Corrochano et al. 2016
Mucoromycota Phycomyces blakesleeanus NRRL1555 v2.0 JGI MycoCosm Corrochano et al. 2016
Mucoromycota Rhizophagus irregularis DAOM 181602 v1.0 JGI MycoCosm Tisserant et al. 2013
Mucoromycota Rhizopus oryzae v1.0 JGI MycoCosm Ma et al. 2009
Zoopagomycota Basidiobolus meristosporus CBS 931.73 v1.0 JGI MycoCosm Mondo et al. 2017
Zoopagomycota Coemansia reversa NRRL 1564 v1.0 JGI MycoCosm Chang et al. 2015
Zoopagomycota Conidiobolus coronatus NRRL 28638 v1.0 JGI MycoCosm Chang et al. 2015
  1. a Denotes genomes that we annotated in this study because no annotations were available at the time of our analyses