Table 2 Representative examples of the new nomenclature of introns in protein-coding genes a
From: Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes
Line | New name | Old name | Fungal taxa | Host gene | Accession | Note | Reference |
|---|---|---|---|---|---|---|---|
1 | Sce.cox1S169 | aI1 | Saccharomyces cerevisiae | cox1 | NC_001224 | Group II intron | Foury et al. 1998 |
2 | Sce.cox1P971 | aI5α | Saccharomyces cerevisiae | cox1 | NC_001224 | Group I intron | Foury et al. 1998 |
3 | Sce.cox1P1107 | aI5β | Saccharomyces cerevisiae | cox1 | NC_001224 | Group I intron | Foury et al. 1998 |
4 | Sce.cox1S1132 | aI5ɣ | Saccharomyces cerevisiae | cox1 | NC_001224 | Group II intron | Foury et al. 1998 |
5 | Cgl.cox1P240 | CgCox1.1 | Candida glabrata | cox1 | NC_004691 | Group I intron | Koszul et al. 2003 |
6 | Cgl.cox1P386 | CgCox1.2 | Candida glabrata | cox1 | NC_004691 | Group I intron | Koszul et al. 2003 |
7 | Cgl.cox1P971 | CgCox1.3 | Candida glabrata | cox1 | NC_004691 | Group I intron | Koszul et al. 2003 |
8 | Cme.cobP393 | bI1 | Candida metapsilosis | cob | NC_006971 | Group I intron | Kosa et al. 2006 |
9 | Hth.nad1P636 | nad1-i1 | Hirsutella thompsonii | nad1 | NC_040165 | Group I intron | Wang et al. 2018 |
10 | Ici.atp9P181 | atp9-i1 | Isaria cicadae | atp9 | MH922223 | Group I intron | Fan et al. 2019 |
11 | Cpse.nad5U717 | Candida pseudojiufengensis | nad5 | NC_022156 | Unknown intron type | Unpublished | |
12 | Cpsy.nad5P717 | Candida psychrophila | nad5 | NC_036103 | Group I intron | Unpublished | |
13 | Hau.cox3P640a | cox3-i2 | Hypomyces aurantius | cox3 | NC_030206 | 1st one in twintron | Deng et al. 2016 |
14 | Hau.cox3P640b | cox3-i2 | Hypomyces aurantius | cox3 | NC_030206 | 2nd one in twintron | Deng et al. 2016 |
15 | Hth.cobP429–1 | cob-i2 | Hirsutella thompsonii | cob | NC_040165 | Strain: ARSEF 9457 | Wang et al. 2018 |
16 | Hth.cobP429–2 | cob-i2 | Hirsutella thompsonii | cob | MH367296 | Strain: ARSEF 1947 | Wang et al. 2018 |
17 | Zsa.nad5P717 | ND5–717 | Zoanthus sansibaricus | nad5 | KY888672 | Coral: Group I intron | Chi and Johansen 2017 |
18 | Zsa.cox1P867 | COI-867 | Zoanthus sansibaricus | cox1 | KY888672 | Coral: Group I intron | Chi and Johansen 2017 |
19 | Mbr.nad5P717 | Monosiga brevicollis | nad5 | AF538053 | Protist: Group I intron | Burger et al. 2003 | |
20 | Ddi.cox2P357 | Dictyostelium discoideum | cox1/2 | NC_000895 | Protist: Group I intron | Ogawa et al. 2000 | |
21 | Mpo.nad5P717 | Marchantia polymorpha | nad5 | M68929 | Plant: Group I intron | Oda et al. 1992 | |
22 | Ath.cox2S691 | Arabidopsis thaliana | cox2 | NC_037304 | Plant: Group II intron | Sloan et al. 2018 |