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Table 2 Representative examples of the new nomenclature of introns in protein-coding genes a

From: Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes

Line New name Old name Fungal taxa Host gene Accession Note Reference
1 Sce.cox1S169 aI1 Saccharomyces cerevisiae cox1 NC_001224 Group II intron Foury et al. 1998
2 Sce.cox1P971 aI5α Saccharomyces cerevisiae cox1 NC_001224 Group I intron Foury et al. 1998
3 Sce.cox1P1107 aI5β Saccharomyces cerevisiae cox1 NC_001224 Group I intron Foury et al. 1998
4 Sce.cox1S1132 aI5ɣ Saccharomyces cerevisiae cox1 NC_001224 Group II intron Foury et al. 1998
5 Cgl.cox1P240 CgCox1.1 Candida glabrata cox1 NC_004691 Group I intron Koszul et al. 2003
6 Cgl.cox1P386 CgCox1.2 Candida glabrata cox1 NC_004691 Group I intron Koszul et al. 2003
7 Cgl.cox1P971 CgCox1.3 Candida glabrata cox1 NC_004691 Group I intron Koszul et al. 2003
8 Cme.cobP393 bI1 Candida metapsilosis cob NC_006971 Group I intron Kosa et al. 2006
9 Hth.nad1P636 nad1-i1 Hirsutella thompsonii nad1 NC_040165 Group I intron Wang et al. 2018
10 Ici.atp9P181 atp9-i1 Isaria cicadae atp9 MH922223 Group I intron Fan et al. 2019
11 Cpse.nad5U717   Candida pseudojiufengensis nad5 NC_022156 Unknown intron type Unpublished
12 Cpsy.nad5P717   Candida psychrophila nad5 NC_036103 Group I intron Unpublished
13 Hau.cox3P640a cox3-i2 Hypomyces aurantius cox3 NC_030206 1st one in twintron Deng et al. 2016
14 Hau.cox3P640b cox3-i2 Hypomyces aurantius cox3 NC_030206 2nd one in twintron Deng et al. 2016
15 Hth.cobP429–1 cob-i2 Hirsutella thompsonii cob NC_040165 Strain: ARSEF 9457 Wang et al. 2018
16 Hth.cobP429–2 cob-i2 Hirsutella thompsonii cob MH367296 Strain: ARSEF 1947 Wang et al. 2018
17 Zsa.nad5P717 ND5–717 Zoanthus sansibaricus nad5 KY888672 Coral: Group I intron Chi and Johansen 2017
18 Zsa.cox1P867 COI-867 Zoanthus sansibaricus cox1 KY888672 Coral: Group I intron Chi and Johansen 2017
19 Mbr.nad5P717   Monosiga brevicollis nad5 AF538053 Protist: Group I intron Burger et al. 2003
20 Ddi.cox2P357   Dictyostelium discoideum cox1/2 NC_000895 Protist: Group I intron Ogawa et al. 2000
21 Mpo.nad5P717   Marchantia polymorpha nad5 M68929 Plant: Group I intron Oda et al. 1992
22 Ath.cox2S691   Arabidopsis thaliana cox2 NC_037304 Plant: Group II intron Sloan et al. 2018
  1. a Examples from lines 1 to 16 are fungal species, and those from lines 17 to 22 are plant/protist/animal species as indicated in the column “Note”