Genus
|
Dataset
|
Maximum likelihood
|
| |
Subst. modela
|
NSTb
|
Rate matrix
|
p-inv
|
Gamma
|
Rates
|
Botryosphaeria
|
ITS
|
TrN + I
|
6
|
1.0000
|
1.5461
|
1.0000
|
1.0000
|
5.4052
|
0.7570
|
–
|
Equal
|
|
tef1
|
TVM + I
|
6
|
1.2703
|
4.1281
|
1.8345
|
0.0377
|
4.1281
|
0.5680
|
–
|
Equal
|
|
tub2
|
TIM2 + G
|
6
|
0.2584
|
4.1669
|
0.2584
|
1.0000
|
8.5072
|
–
|
0.0280
|
Gamma
|
|
rpb2
|
TPM3uf + I
|
6
|
2872.6267
|
37,884.9415
|
1.0000
|
2872.6267
|
37,884.9415
|
0.7290
|
–
|
Equal
|
|
ITS/tef1/tub2
|
TrN + I
|
6
|
1.0000
|
3.6483
|
1.0000
|
1.0000
|
6.4337
|
0.7430
|
–
|
Equal
|
Lasiodiplodia
|
ITS
|
TPM1uf + I + G
|
6
|
1.0000
|
8.3069
|
3.1151
|
3.1151
|
8.3069
|
0.6640
|
0.7300
|
Gamma
|
|
tef1
|
TrN + G
|
6
|
1.0000
|
3.1913
|
1.0000
|
1.0000
|
5.0207
|
–
|
0.4440
|
Gamma
|
|
tub2
|
TIM3 + G
|
6
|
2.6726
|
3.8861
|
1.0000
|
2.6726
|
10.7258
|
–
|
0.4200
|
Gamma
|
|
rpb2
|
TrN + I + G
|
6
|
1.0000
|
4.7971
|
1.0000
|
1.0000
|
13.7321
|
0.4690
|
1.8510
|
Gamma
|
|
ITS/tef1/tub2/rpb2
|
TIM2 + I + G
|
6
|
1.2861
|
4.0643
|
1.2861
|
1.0000
|
8.3643
|
0.5010
|
0.6480
|
Gamma
|
Neofusicoccum
|
ITS
|
TIM1 + I + G
|
6
|
1.0000
|
10.7228
|
2.7330
|
2.7330
|
23.3748
|
0.5420
|
0.5670
|
Gamma
|
|
tef1
|
TPM2uf + G
|
6
|
1.6352
|
7.1729
|
1.6352
|
1.0000
|
7.1729
|
–
|
0.6840
|
Gamma
|
|
tub2
|
TIM3 + G
|
6
|
1.9226
|
7.3114
|
1.0000
|
1.9226
|
12.7028
|
–
|
0.2070
|
Gamma
|
|
rpb2
|
TIM3 + G
|
6
|
2.4608
|
9.3031
|
1.0000
|
2.4608
|
24.9646
|
–
|
0.2660
|
Gamma
|
|
ITS/tef1/tub2/rpb2
|
TrN + I + G
|
6
|
1.0000
|
5.0967
|
1.0000
|
1.0000
|
9.7420
|
0.4430
|
0.7340
|
Gamma
|
Genus
|
Dataset
|
No. of taxa
|
No. of bpc
|
Maximum parsimony
| |
| | | |
PICd
|
No. of trees
|
Tree length
|
CIe
|
RIf
|
RCg
|
HIh
| |
Botryosphaeria
|
ITS
|
49
|
530
|
30
|
86
|
51
|
0.8039
|
0.8913
|
0.7165
|
0.1961
| |
|
tef1
|
49
|
353
|
115
|
120
|
152
|
0.8684
|
0.9385
|
0.8150
|
0.1316
| |
|
tub2
|
42
|
414
|
22
|
35
|
30
|
0.8000
|
0.9063
|
0.7250
|
0.2000
| |
|
rpb2
|
30
|
718
|
23
|
4
|
37
|
0.8378
|
0.9483
|
0.7945
|
0.1622
| |
|
ITS/tef1/tub2
|
49
|
1297
|
167
|
234
|
241
|
0.8174
|
0.9085
|
0.7427
|
0.1826
| |
Lasiodiplodia
|
ITS
|
74
|
511
|
50
|
5000
|
91
|
0.6813
|
0.8858
|
0.6035
|
0.3187
| |
|
tef1
|
73
|
323
|
135
|
1233
|
415
|
0.6024
|
0.8922
|
0.5375
|
0.3976
| |
|
tub2
|
64
|
409
|
41
|
5000
|
60
|
0.7667
|
0.9310
|
0.7138
|
0.2333
| |
|
rpb2
|
53
|
532
|
104
|
3297
|
192
|
0.6354
|
0.8649
|
0.5496
|
0.3646
| |
|
ITS/tef1/tub2/rpb2
|
74
|
1775
|
330
|
3989
|
854
|
0.5621
|
0.8508
|
0.4782
|
0.4379
| |
Neofusicoccum
|
ITS
|
99
|
535
|
86
|
1790
|
205
|
0.5512
|
0.8844
|
0.4875
|
0.4488
| |
|
tef1
|
98
|
307
|
150
|
5000
|
312
|
0.7308
|
0.9413
|
0.6879
|
0.2692
| |
|
tub2
|
98
|
424
|
72
|
1380
|
149
|
0.6040
|
0.8952
|
0.5407
|
0.3960
| |
|
rpb2
|
76
|
605
|
116
|
2619
|
201
|
0.6915
|
0.9180
|
0.6348
|
0.3085
| |
|
ITS/tef1/tub2/rpb2
|
101
|
1871
|
424
|
3584
|
936
|
0.6090
|
0.8968
|
0.5461
|
0.3910
| |
- a Subst. model = best fit substitution model
- b NST Number of substitution rate categories
- c bp Base pairs
- d PIC Number of parsimony informative characters
- e CI Consistency index
- f RI Retention index
- g RC Rescaled consistency index
- h HI Homoplasy index