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Fig. 2 | IMA Fungus

Fig. 2

From: Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota)

Fig. 2

Phylogenetic relationships among major lineages of Parmeliaceae, represented by 81 specimens. The tree shown was generated by Maximum Likelihood inference using IQ-TREE of a data set containing the 250 most phylogenetic informative genes of the target enrichment gene set. Additional trees generated by Maximum Likelihood using RAxML and Bayesian interference using MrBayes resulted with the same topology. All nodes of the three trees received 100% bootstrap support (BS) with IQ-TREE and RAxML or 1.0 posterior probability (PP) with MrBayes unless highlighted by an open circle and the respective support values (IQ-TREE BS/RAxML BS/MrBayes PP). Major clades of Parmeliaceae are highlighted by different colors. The dotted box highlights the conflict between the concatenated-based trees (IQ-TREE, RAxML, MrBayes) and coalescent-based tree (ASTRAL-III). The unit of branch length is substitutions per site

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IMA Fungus

ISSN: 2210-6359

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