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Table 1 Accepted species of Protomyces.

From: A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data

Species

Synonym

Host genera

Host family a

Source b

ITS c

Strains d

Genome e

P. gravidus

-

Ambrosia, Bidens

Compositae

A

This study

(MK937055)

Y-17093; ATCC 64066

Wang et al. 2019 (QXDP00000000)

P. inouyei

-

Crepis

Compositae

A

This study

(MK937056)

CBS 222.57; YB-4354; YB-4365; NBRC 6898; IAM 14512; ATCC 16175; UAMH 1743

Wang et al. 2019 (QXDQ00000000)

P. lactucaedebilis

-

Lactuca debilis

Compositae

A

This study

(MK937058)

CBS 223.57; YB-4353; Phaff 12-1054; NBRC 6899

Wang et al. 2019, Riley et al. 2016 (QXDS00000000)

P. macrosporus†

Physoderma gibbosum,

P. cari

Aegopodium, Ammi, Angelica, Anthriscus, Archangelica, Athamanta, Canopodium, Carum, Caucalis, Cherophyllum, Coriandrum, Ferula, Heracleum, Hydrocotyle, Laserpitim, Ligusticum, Meum, Onanthe, Pancicia, Parum, Peucedanum, Pimpinella, Seseli, Ssilaus, Thapsia, Trinia

Umbelliferae

A

This study

(MK937059)

Y-12879; PYCC 4286; ATCC 56196

Wang et al. 2019 (QXDT00000000)

P. pachydermus

P. kreuthensis,

P. centarea,

P. crepidis,

P. crepidicola,

P. crepidis-paludosae,

P. picridis,

P. kriegarianus, P. crisii-oleracei

Aposeris, Centaurea, Crespis, Criseum, Hyoseris, Hypochaeris, Leontodon, Picris, Taraxacum.

Compositae

A

This study

(MK937060)

CBS 224.57; YB-4355; Y-6348; Y-27322; Y-27323, DSM5500; NBRC 6900; IAM 14514; ATCC 90575; MUCL 38937

Wang et al. 2019 (QXDU00000000)

P. inundatus

P. helosciadii, Taphridium innundatus

Apium, Daucus, Sium

Umbelliferae

B, C

This study

(MK937057)

Y-6349; Y-6802; IAM 6847; ATCC 28148, ATCC 22667; ATCC 28130; ATCC 22666,

Wang et al. 2019 (QXDR00000000)

P. arabidopsidicola

-

Arabidopsis thaliana

Brassicaceae

D

This study

(LT602858)

HAMBI3697, DSM 110145

Wang et al. 2019 (QXMI00000000)

P. burenianus

 

Galinsoga parviflora

Compositae

E

None

None

None

P. cirsii-oleracei

 

Cirsium oleraceum

Compositae

F

None

None

None

P. andinus

P. giganteus

Bidens, Hypochoeris

Compositae

A

None

None

None

P. burenianus

-

Galinsoga

Compositae

A

None

None

None

P. grandisporus

-

Ambrosia

Compositae

A

None

None

None

P. matricariae

-

Matricaria

Compositae

A

None

None

None

P. sonchi

-

Sonchus

Compositae

A

None

None

None

  1. aHost plant family: A single family name listed below, both valid names for the same family are listed here; Compositae (Asteraceae), Umbelliferae (Apiaceae), or Brassicaceae (Cruciferae). b Sources: A, Reddy and Kramer (1975); B, Kurtzman et al. (2011); C, Kurtzman and Robnett (1998); D, Wang et al. (2019); E, Bacigálová (2008); F, Bacigálová et al. (2005). c Availability of ITS: Internal Transcribed Spacer sequences (with Genebank accession numbers in parentheses) d Thirty major yeast culture collections were queried for availability of Protomyces species in July 2019. The accession numbers of available strains are listed below. Accession numbers that are underlined indicate type strain cultures, which are also the strains used in this study. The full list of queried collections is available in Supplemental file 1. Collections with strains of Protomyces species available are listed below: Microbial Domain Biological Resource Centre, Helsinki, Finland (HAMBI; https://www.helsinki.fi/en/infrastructures/biodiversity-collections/infrastructures/microbial-domain-biological-resource-centre-hambi); The German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany (DSMZ; www.dsmz.de); The Japan Collection of Microorganisms, Koyadai, Tsukuba, Ibaraki, Japan (JCM/IAM; jcm.brc.riken.jp/en/); Biological Resource Center NITE, Chiba, Japan (NBRC; www.nite.go.jp/en/nbrc); CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands (CBS; http://www.westerdijkinstitute.nl/Collections/); The Portuguese Yeast Culture Collection, Caparica, Portugal (PYCC; http://pycc.bio-aware.com/); Agricultural Research Service Culture Collection, Peoria, IL, USA (Y-/YB-/NRRL; nrrl.ncaur.usda.gov); American Type Culture Collection, Manassas, VA, USA (ATCC; www.atcc.org); University of California Phaff Culture Collection, Davis, CA, USA (UCD-FST; http://phaffcollection.ucdavis.edu); Belgian Coordinated Collection of Microorganisms, Louvain-la-Neuve, Belgium (BCCM/MCLU; http://bccm.belspo.be/); The UAMH Centre for Global Microfungal Biodiversity, Toronto, Canada (UAMH; www.uamh.ca). e Availability of genome sequencing studies: Wang et al., (2020); Riley et al. (2016), (with Genebank accession numbers in parentheses.) † Type species, Protomyces Unger 1833
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IMA Fungus

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