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Table 3 Percent nucleotide identity for three phylogenetic marker genes

From: A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data

  Pinu Pmac Pgra Plac Pino Ppac Para
(a) ITS
 Pinu 100       
 Pmac 98.1 100      
 Pgra 90.3 89.8 100     
 Plac 90.6 90.8 90.1 100    
 Pino 90.9 91.0 91.1 98.3 100   
 Ppac 90.4 91.4 90.2 98.1 98.2 100  
 Para 91.7 91.7 90.8 95.7 96.2 95.5 100
(b) D1/D2
 Pinu 100       
 Pmac 99.8 100      
 Pgra 96.9 96.7 100     
 Plac 97.6 97.4 96.2 100    
 Pino 97.9 97.7 96.2 99.7 100   
 Ppac 97.7 97.6 96.4 99.5 99.5 100  
 Para 98.1 97.9 96.7 99.5 99.5 99.3 100
(c) Act1
 Pinu 100       
 Pmac 98.8 100      
 Pgra 87.4 86.8 100     
 Plac 88.2 88.2 88.8 100    
 Pino 88.3 88.3 88.8 99.7 100   
 Ppac 87.9 87.9 88.9 98.4 98.2 100  
 Para 87.6 87.8 88.0 95.7 96.7 95.1 100
  1. Percent nucleotide identity between Protomyces species determined by pairwise BLASTn (megablast) alignments for the ribosomal genes ITS (a) and D1/D2 (b), and the protein coding gene, Actin1 (Act1) (c). Species name abbreviations: Protomyces inundatus (Pinu), P. macrosporus (Pmac), P. gravidus (Pgra), P. lactucaedebilis (Plac), P. inouyei (Pino), P. pachydermus (Ppac), and P. arabidopsidicola (Para).