Skip to main content

Table 3 Percent nucleotide identity for three phylogenetic marker genes

From: A novel Arabidopsis phyllosphere resident Protomyces species and a re-examination of genus Protomyces based on genome sequence data

 

Pinu

Pmac

Pgra

Plac

Pino

Ppac

Para

(a) ITS

 Pinu

100

      

 Pmac

98.1

100

     

 Pgra

90.3

89.8

100

    

 Plac

90.6

90.8

90.1

100

   

 Pino

90.9

91.0

91.1

98.3

100

  

 Ppac

90.4

91.4

90.2

98.1

98.2

100

 

 Para

91.7

91.7

90.8

95.7

96.2

95.5

100

(b) D1/D2

 Pinu

100

      

 Pmac

99.8

100

     

 Pgra

96.9

96.7

100

    

 Plac

97.6

97.4

96.2

100

   

 Pino

97.9

97.7

96.2

99.7

100

  

 Ppac

97.7

97.6

96.4

99.5

99.5

100

 

 Para

98.1

97.9

96.7

99.5

99.5

99.3

100

(c) Act1

 Pinu

100

      

 Pmac

98.8

100

     

 Pgra

87.4

86.8

100

    

 Plac

88.2

88.2

88.8

100

   

 Pino

88.3

88.3

88.8

99.7

100

  

 Ppac

87.9

87.9

88.9

98.4

98.2

100

 

 Para

87.6

87.8

88.0

95.7

96.7

95.1

100

  1. Percent nucleotide identity between Protomyces species determined by pairwise BLASTn (megablast) alignments for the ribosomal genes ITS (a) and D1/D2 (b), and the protein coding gene, Actin1 (Act1) (c). Species name abbreviations: Protomyces inundatus (Pinu), P. macrosporus (Pmac), P. gravidus (Pgra), P. lactucaedebilis (Plac), P. inouyei (Pino), P. pachydermus (Ppac), and P. arabidopsidicola (Para).