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Table 1 Specimens used to infer the phylogeny of Squamanitaceae in this study are listed with their Herbarium ID and accession numbers. Newly generated sequences are highlighted in boldface

From: Squamanitaceae and three new species of Squamanita parasitic on Amanita basidiomes

Taxon

Specimen

Locality

ITS

LSU

TEF1-α

RPB2

RPB1

18S

PNS1/NS41 & NS51/NS8

Agaricus bisporus

H97

genome

genome

genome

genome

genome

Agaricus campestris

LAPAG370

Spain

KM657927

KP739803

KR006636

KT951556

Agrocybe praecox

AFTOL-ID 728

AY818348

AY646101

DQ061276

DQ385876

AY705956

Alnicola luteolofibrillosa

TU110320

Estonia

JN943976

JN938776

JN939103

Amanita brunnescens

AFTOL-ID 673

AY789079

AY631902

AY881021

AY780936

AY707096

Auritella foveata

TENN: 063905

India

NR_119762

GU062739

MK426177

GU062738

MK429932

Bolbitius vitellinus

AFTOL-ID 730

DQ200920

AY691807

DQ408148

AY705955

Cercopemyces crocodilinus

UTC258260

USA

JX409899

JX409897

Chlorophyllum agaricoides

AFTOL-ID 440

DQ200928

AY700187

DQ457631

AY657010

Chlorophyllum molybdites

Z.W.Ge 3381

USA

MG741993

MG742034

MG742091

MG742063

Chromocyphella muscicola

ARAN-Fungi 3210

Spain

MF623836

MF623835

MF948156

MF623838

Conocybe lactea

AFTOL-ID 1675

DQ486693

DQ457660

DQ437683

Conocybe tenera

NL-1615

JX968180

JX968296

JX968404

Coprinellus micaceus

FP101781

genome

genome

genome

genome

genome

Coprinus comatus

AFTOL-ID 626

AY854066

AY635772

AY881026

AY780934

AY665772

Cortinarius sodagnitus

AFTOL-ID 811

DQ083812

AY684151

DQ061275

DQ083920

AY752975

Cortinarius violaceus

AFTOL-ID 814

DQ486695

DQ457662

DQ470835

AY705950

Crepidotus cf. applanatus

AFTOL-ID 817

DQ202273

AY380406

DQ028581

AY333311

AY705951

Crucibulum laeve

AFTOL-ID 1334

DQ486696

AF336246

DQ470836

AF026624

Cyathus striatus

AFTOL-ID 1333

DQ486697

AF336247

GU187694

DQ472711

AF026617

Cystoagaricus strobilomyces

E. Nagasawa 9740 (TMI)

Japan

AY176347

AY176348

Cystoderma amianthinum

HKAS106238

China

MW258857

MW258909

MW289802

MW289812

MW258936 & MW258887

Cystoderma amianthinum

HKAS105568

China

MW258858

MW258910

MW289813

MW258937 & MW258888

Cystoderma amianthinum

HKAS57757

China

MW258859

MW258911

MW324503

MW289803

MW289814

MW258938 & MW258889

Cystoderma amianthinum

HKAS107328

China

MW258860

MW258912

MW324504

MW289805

MW289815

MW258939 & MW258890

Cystoderma amianthinum

HKAS107326

China

MW258861

MW258913

MW289804

MW289816

MW258940 & MW258891

Cystoderma amianthinum

HKAS107327

China

MW258862

MW258914

MW324496

MW289806

MW289817

MW258941 & MW258892

Cystoderma amianthinum

TENN: 063549

UK

GU296098

EF535265

GU296097

Cystoderma amianthinum

AFTOL-ID 1553

DQ192177

DQ154108

DQ440632

Cystoderma sp.

HKAS107329

China

MW258863

MW258915

MW324497

MW289818

MW258942 & MW258893

Cystoderma superbum

BR22288–75

Belgium

AM946504

AM946442

Cystoderma superbum

REG (Oct 1976)

Germany

AM946503

AM946443

Cystodermella cinnabarina

TAA147423

Estonia

AM946512

AM946429

Cystodermella granulosa

TAA147491

Estonia

AM946518

AM946431

Descolea tenuipes

TENN:063871

Australia

HQ832453

HQ832466

HQ832443

HQ832432

Descomyces sp. PDD 105133

PDD 105133

New Zealand

KP191860

KP191723

MH594070

Echinoderma asperum

HKAS 106783

North Macedonia

MN810133

MN810088

MN820902

MN820967

Flammula alnicola

AFTOL-ID 1501

DQ486703

DQ457666

GU187699

DQ472714

DQ113916

Flammulaster sp. PBM 1871

PBM 1871

AY380408

AY333315

Flammulaster sp. PBM4140

PBM4140

USA

MG773817

MT237465

Floccularia luteovirens

Y1

China

genome

genome

genome

genome

genome

Floccularia luteovirens

FLZJUC10

China

genome

genome

genome

genome

genome

Floccularia albolanaripes

HKAS107739

China

MW258875

MW258923

MW324498

MW289809

MW258944 & MW258896

Floccularia albolanaripes

HKAS107740

China

MW258876

MW258924

MW324499

MW289810

MW258945 & MW258897

Floccularia albolanaripes

HKAS107741

China

MW258877

MW258925

MW324500

MW289811

MW258946 & MW258898

Galerina marginata

AFTOL-ID 465

DQ192182

DQ457669

DQ440635

Galerina semilanceata

AFTOL-ID 1497

DQ486706

AY038309

AY337357

DQ440639

Hebeloma mesophaeum

KRAM:F57431

Romania

KT071038

KT071100

KT071077

Hebeloma velutipes

AFTOL-ID 980

AY818351

AY745703

GU187707

DQ472718

AY752972

Heinemannomyces splendidissimus

E.C. Vellinga ecv3586 (UC)

Thailand

HM488760

HM488769

HM488793

Hypholoma fasciculare

AFTOL-ID 597

AY818349

AY380409

AY337413

AY787215

Inocybe myriadophylla

AFTOL-ID 482

DQ221106

AY700196

DQ435791

AY803751

AY657016

Inocybe rimosoides

AFTOL-ID 520

DQ404391

AY702014

DQ435790

DQ385884

AY752967

Inosperma calamistrata

PBM1105

USA

JQ801386

JQ815409

MK426203

JQ846466

MK429958

Kuehneromyces rostratus

AFTOL-ID 1676

DQ490638

DQ457684

GU187712

DQ472730

DQ457624

Laccaria laccata

GMM7605

JX504146

KU685901

KU686154

KU686048

Laccaria ochropurpurea

AFTOL-ID 477

AY700200

DQ472731

AY654886

Lacrymaria velutina

AFTOL-ID 478

DQ490639

AY700198

DQ472733

AY654885

Lepiota clypeolaria

HKAS87248

China

MN810123

MN810080

MN820932

MN820941

Leucoagaricus rubrotinctus

HKAS54317

China

JN944082

JN940294

JN993685

JN940434

Leucocoprinus cepistipes

xml2014128

China

LT716023

KY418838

KY419045

KY418990

Leucocoprinus fragilissimus

ZRL20151466

China

LT716029

KY418844

KY419049

KY418994

KY418913

Leucopholiota aff. decorosa

AJ790

USA

MK278297

Leucopholiota decorosa

TENN:068830

USA

KY777364

MF797662

Lycoperdon ericaeum

ZRL20151498

China

LT716030

KY418845

KY418995

KY418914

Lycoperdon perlatum

KA13–0555

China

KP340193

KU764403

KU764393

Lycoperdon pyriforme

AFTOL-ID 480

AY854075

AY883426

AY218495

Macrolepiota dolichaula

AFTOL-ID 481

China

DQ221111

 

DQ435785

DQ385886

AY771602

Macrolepiota procera

HKAS8108

China

JN940277

JN993697

JN940449

Mallocybe terrigena

JV 16431 (WTU)

AY380401

AY333309

Micropsalliota globocystis

ZRL2013465

LT716024

KY418839

KY419046

KY418991

Mycocalia denudata

AFTOL-ID 2018

Canada

DQ911596

DQ911597

DQ911598

Mythicomyces corneipes

AFTOL-ID 972

DQ404393

AY745707

DQ029197

DQ408110

DQ092917

Nematoloma longisporum

AFTOL-ID 1893

DQ490634

DQ457681

DQ444863

Nidula niveotomentosa

AFTOL-ID 1945

Canada

DQ917654

DQ986295

GU296099

Nidula sp.

ZRL20151405

China

LT716028

KY418843

KY418912

Nidularia farcta

AFTOL-ID 1933

Sweden

GU296100

EF535276

Nidularia farcta

ZRL2015047

LT716025

KY418840

KY419047

KY418909

Nothocybe distincta

ZT 9250

India

KX171343

EU604546

MK426212

EU600904

MK429965

Parasola conopila

ZRL20151990

China

LT716064

KY418880

KY419025

KY418946

Parasola conopilea

TUB 011587

DQ071706

Parasola plicatilis

SZMC-NL-0295

FM163216

FM160693

FM897242

Phaeocollybia festiva

AFTOL-ID 1489

DQ494682

AY509119

AY509118

DQ462516

Phaeolepiota aurea

HKAS93945

China

MW258864

MW258916

MW324501

MW289807

MW258943 & MW258894

Phaeolepiota aurea

HKAS107738

China

MW258865

MW258917

MW324502

MW289808

- & MW258895

Phaeomarasmius proximans

AFTOL-ID 979

DQ404381

AY380410

DQ028592

AY333314

AY752970

Phaeonematoloma myosotis

SJ97002

Sweden

AF195599

AY586697

Pholiota lenta

PBM4233

USA

MN209743

MN251131

MN329707

Pholiota squarrosa

AFTOL-ID 1627

DQ494683

DQ470818

DQ465337

Pholiotina filaris

AFTOL-ID 1498

DQ494684

DQ470819

DQ465338

Psathyloma leucocarpum

PBM3116

New Zealand

HQ840659

HQ840660

HQ840662

HQ840661

Psathyrella candolleana

ZRL20151400

China

LT716063

KY418879

KY419075

KY419024

KY418945

Psathyrella panaeoloides

SZMC-NL-2537

FM878022

FM876279

Psathyrella spadicea

AFTOL-ID 1628

DQ494690

DQ470822

DQ465340

Psathyrella spadicea

SZMC-NL-3996

FN396132

FN396180

FN396231

Pseudolepiota zangmui

Z.W.Ge 2175

KY768928

MG742049

MG742106

KY768929

Pseudosperma rimosum

PBM3901

USA

JQ408772

MH220278

MK426218

MH249810

MK429971

Psilocybe montana

AFTOL-ID 820

DQ494692

DQ470823

DQ465342

Psilocybe subaeruginosa

PBM3218

Australia

KF830079

KF830062

KF830071

Ripartitella brasiliensis

A.E. Franco-Molano 499 (NY)

Colombia

AM946524

AM946465

Simocybe serrulata

AFTOL-ID 970

DQ494696

AY745706

GU187755

DQ484053

DQ465343

Squamanita fimbriata

LUG 12901

Switzerland

MF444998

Squamanita mira

HKAS107309A

Jiangxi, China

MW258848

MW258900

MW324490

MW289797

MW258927 & MW258879

Squamanita mira

HKAS107737A

Yunnan, China

MW258849

MW258901

MW324491

MW289798

MW258928 & MW258880

Squamanita mira (holotype)

HKAS100826A

Yunnan, China

MW258847

MW258899

MW324489

MW289796

MW258926 & MW258878

Squamanita odorata

O-F-310485

Norway

MG711653

Squamanita odorata

O-F-146743

Norway

MG711655

Squamanita odorata

WRSL EF-2009-0001

Poland

MF444999

Squamanita odorata

K(M)178,855

England, UK

MK192934

Squamanita odorata

Ruaudin, France

EF091828

Squamanita odorata

DAOM225481

Honshu, Japan

Squamanita orientalis (holotype)

HKAS74862A

Yunnan, China

MW258851

MW258903

MW324509

MW289799

MW258930 & MW258881

Squamanita paradoxa

GG_BM05B

Wales, UK

EF535266

Squamanita paradoxa

A. Leclerque s.n.

Belgium

MK377323

Squamanita paradoxa

herb. A. Leclerque s.n. (BR)

Belgium

MK408620

Squamanita paradoxa

TENN: 063549

Wales, UK

GU296096

GU296095

Squamanita pearsonii

E:204926

Scotland, UK

MK192940

Squamanita pearsonii

E:282464p

Wales, UK

MK192941

Squamanita pseudofimbriata

WRSL RRy-2013-0001

Poland

MF444997

Squamanita schreieri (epitype)

ZT Myc 2158

Baden-Württemberg, Germany

MW258852

MW258904

MW324510

MW289801

MW258931 & MW258882

Squamanita sororcula (holotype)

HKAS107306A

Yunnan, China

MW258850

MW258902

MW324507

MW258929 & -

Squamanita umbonata

TENN:57939

North Carolina, USA

EF184305

Squamanita umbonata

DAOM199323

Rhode Island, USA

AF261508

Squamanita umbonata

R.E.Halling7691(NY79971)

Alajuela, Costa Rica

MW258853

MW258905

MW324506

MW289800

MW258932 & MW258883

“Squamanita umbonata

H.E.Bigelow17431(NY2776224)

Massachusetts, USA

MW258854

MW258906

MW258933 & MW258884

Squamanita umbonata

C.BAS3808 (NY1840398)

Massachusetts, USA

MW258855

MW258907

MW258934 & MW258885

Squamanita umbonata

HKAS107325A

Liguria, Italy

MW258856

MW258908

MW324508

MW258935 & MW258886

Stagnicola perplexa

ALV17086

Denmark

MK351604

MK353788

MK359087

MK353797

Stropharia ambigua

AFTOL-ID 726

AY818350

AY646102

GU187756

DQ484054

DQ092924

Tubaria confragosa

AFTOL-ID 498

DQ267126

AY700190

DQ408113

AY665776

Tubariomyces sp.

BB6018

Zambia

MK421965

EU600887

MK426220

EU600886

MK429974

Tulostoma calcareum

GB MJ6965

Sweden

NR_164015

KU519086

KU843881

Verrucospora flavofusca

AFTOL-ID 655

China

DQ241779

DQ470825

AY665783