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Table 1 Specimens used to infer the phylogeny of Squamanitaceae in this study are listed with their Herbarium ID and accession numbers. Newly generated sequences are highlighted in boldface

From: Squamanitaceae and three new species of Squamanita parasitic on Amanita basidiomes

Taxon Specimen Locality ITS LSU TEF1-α RPB2 RPB1 18S
PNS1/NS41 & NS51/NS8
Agaricus bisporus H97 genome genome genome genome genome
Agaricus campestris LAPAG370 Spain KM657927 KP739803 KR006636 KT951556
Agrocybe praecox AFTOL-ID 728 AY818348 AY646101 DQ061276 DQ385876 AY705956
Alnicola luteolofibrillosa TU110320 Estonia JN943976 JN938776 JN939103
Amanita brunnescens AFTOL-ID 673 AY789079 AY631902 AY881021 AY780936 AY707096
Auritella foveata TENN: 063905 India NR_119762 GU062739 MK426177 GU062738 MK429932
Bolbitius vitellinus AFTOL-ID 730 DQ200920 AY691807 DQ408148 AY705955
Cercopemyces crocodilinus UTC258260 USA JX409899 JX409897
Chlorophyllum agaricoides AFTOL-ID 440 DQ200928 AY700187 DQ457631 AY657010
Chlorophyllum molybdites Z.W.Ge 3381 USA MG741993 MG742034 MG742091 MG742063
Chromocyphella muscicola ARAN-Fungi 3210 Spain MF623836 MF623835 MF948156 MF623838
Conocybe lactea AFTOL-ID 1675 DQ486693 DQ457660 DQ437683
Conocybe tenera NL-1615 JX968180 JX968296 JX968404
Coprinellus micaceus FP101781 genome genome genome genome genome
Coprinus comatus AFTOL-ID 626 AY854066 AY635772 AY881026 AY780934 AY665772
Cortinarius sodagnitus AFTOL-ID 811 DQ083812 AY684151 DQ061275 DQ083920 AY752975
Cortinarius violaceus AFTOL-ID 814 DQ486695 DQ457662 DQ470835 AY705950
Crepidotus cf. applanatus AFTOL-ID 817 DQ202273 AY380406 DQ028581 AY333311 AY705951
Crucibulum laeve AFTOL-ID 1334 DQ486696 AF336246 DQ470836 AF026624
Cyathus striatus AFTOL-ID 1333 DQ486697 AF336247 GU187694 DQ472711 AF026617
Cystoagaricus strobilomyces E. Nagasawa 9740 (TMI) Japan AY176347 AY176348
Cystoderma amianthinum HKAS106238 China MW258857 MW258909 MW289802 MW289812 MW258936 & MW258887
Cystoderma amianthinum HKAS105568 China MW258858 MW258910 MW289813 MW258937 & MW258888
Cystoderma amianthinum HKAS57757 China MW258859 MW258911 MW324503 MW289803 MW289814 MW258938 & MW258889
Cystoderma amianthinum HKAS107328 China MW258860 MW258912 MW324504 MW289805 MW289815 MW258939 & MW258890
Cystoderma amianthinum HKAS107326 China MW258861 MW258913 MW289804 MW289816 MW258940 & MW258891
Cystoderma amianthinum HKAS107327 China MW258862 MW258914 MW324496 MW289806 MW289817 MW258941 & MW258892
Cystoderma amianthinum TENN: 063549 UK GU296098 EF535265 GU296097
Cystoderma amianthinum AFTOL-ID 1553 DQ192177 DQ154108 DQ440632
Cystoderma sp. HKAS107329 China MW258863 MW258915 MW324497 MW289818 MW258942 & MW258893
Cystoderma superbum BR22288–75 Belgium AM946504 AM946442
Cystoderma superbum REG (Oct 1976) Germany AM946503 AM946443
Cystodermella cinnabarina TAA147423 Estonia AM946512 AM946429
Cystodermella granulosa TAA147491 Estonia AM946518 AM946431
Descolea tenuipes TENN:063871 Australia HQ832453 HQ832466 HQ832443 HQ832432
Descomyces sp. PDD 105133 PDD 105133 New Zealand KP191860 KP191723 MH594070
Echinoderma asperum HKAS 106783 North Macedonia MN810133 MN810088 MN820902 MN820967
Flammula alnicola AFTOL-ID 1501 DQ486703 DQ457666 GU187699 DQ472714 DQ113916
Flammulaster sp. PBM 1871 PBM 1871 AY380408 AY333315
Flammulaster sp. PBM4140 PBM4140 USA MG773817 MT237465
Floccularia luteovirens Y1 China genome genome genome genome genome
Floccularia luteovirens FLZJUC10 China genome genome genome genome genome
Floccularia albolanaripes HKAS107739 China MW258875 MW258923 MW324498 MW289809 MW258944 & MW258896
Floccularia albolanaripes HKAS107740 China MW258876 MW258924 MW324499 MW289810 MW258945 & MW258897
Floccularia albolanaripes HKAS107741 China MW258877 MW258925 MW324500 MW289811 MW258946 & MW258898
Galerina marginata AFTOL-ID 465 DQ192182 DQ457669 DQ440635
Galerina semilanceata AFTOL-ID 1497 DQ486706 AY038309 AY337357 DQ440639
Hebeloma mesophaeum KRAM:F57431 Romania KT071038 KT071100 KT071077
Hebeloma velutipes AFTOL-ID 980 AY818351 AY745703 GU187707 DQ472718 AY752972
Heinemannomyces splendidissimus E.C. Vellinga ecv3586 (UC) Thailand HM488760 HM488769 HM488793
Hypholoma fasciculare AFTOL-ID 597 AY818349 AY380409 AY337413 AY787215
Inocybe myriadophylla AFTOL-ID 482 DQ221106 AY700196 DQ435791 AY803751 AY657016
Inocybe rimosoides AFTOL-ID 520 DQ404391 AY702014 DQ435790 DQ385884 AY752967
Inosperma calamistrata PBM1105 USA JQ801386 JQ815409 MK426203 JQ846466 MK429958
Kuehneromyces rostratus AFTOL-ID 1676 DQ490638 DQ457684 GU187712 DQ472730 DQ457624
Laccaria laccata GMM7605 JX504146 KU685901 KU686154 KU686048
Laccaria ochropurpurea AFTOL-ID 477 AY700200 DQ472731 AY654886
Lacrymaria velutina AFTOL-ID 478 DQ490639 AY700198 DQ472733 AY654885
Lepiota clypeolaria HKAS87248 China MN810123 MN810080 MN820932 MN820941
Leucoagaricus rubrotinctus HKAS54317 China JN944082 JN940294 JN993685 JN940434
Leucocoprinus cepistipes xml2014128 China LT716023 KY418838 KY419045 KY418990
Leucocoprinus fragilissimus ZRL20151466 China LT716029 KY418844 KY419049 KY418994 KY418913
Leucopholiota aff. decorosa AJ790 USA MK278297
Leucopholiota decorosa TENN:068830 USA KY777364 MF797662
Lycoperdon ericaeum ZRL20151498 China LT716030 KY418845 KY418995 KY418914
Lycoperdon perlatum KA13–0555 China KP340193 KU764403 KU764393
Lycoperdon pyriforme AFTOL-ID 480 AY854075 AY883426 AY218495
Macrolepiota dolichaula AFTOL-ID 481 China DQ221111   DQ435785 DQ385886 AY771602
Macrolepiota procera HKAS8108 China JN940277 JN993697 JN940449
Mallocybe terrigena JV 16431 (WTU) AY380401 AY333309
Micropsalliota globocystis ZRL2013465 LT716024 KY418839 KY419046 KY418991
Mycocalia denudata AFTOL-ID 2018 Canada DQ911596 DQ911597 DQ911598
Mythicomyces corneipes AFTOL-ID 972 DQ404393 AY745707 DQ029197 DQ408110 DQ092917
Nematoloma longisporum AFTOL-ID 1893 DQ490634 DQ457681 DQ444863
Nidula niveotomentosa AFTOL-ID 1945 Canada DQ917654 DQ986295 GU296099
Nidula sp. ZRL20151405 China LT716028 KY418843 KY418912
Nidularia farcta AFTOL-ID 1933 Sweden GU296100 EF535276
Nidularia farcta ZRL2015047 LT716025 KY418840 KY419047 KY418909
Nothocybe distincta ZT 9250 India KX171343 EU604546 MK426212 EU600904 MK429965
Parasola conopila ZRL20151990 China LT716064 KY418880 KY419025 KY418946
Parasola conopilea TUB 011587 DQ071706
Parasola plicatilis SZMC-NL-0295 FM163216 FM160693 FM897242
Phaeocollybia festiva AFTOL-ID 1489 DQ494682 AY509119 AY509118 DQ462516
Phaeolepiota aurea HKAS93945 China MW258864 MW258916 MW324501 MW289807 MW258943 & MW258894
Phaeolepiota aurea HKAS107738 China MW258865 MW258917 MW324502 MW289808 - & MW258895
Phaeomarasmius proximans AFTOL-ID 979 DQ404381 AY380410 DQ028592 AY333314 AY752970
Phaeonematoloma myosotis SJ97002 Sweden AF195599 AY586697
Pholiota lenta PBM4233 USA MN209743 MN251131 MN329707
Pholiota squarrosa AFTOL-ID 1627 DQ494683 DQ470818 DQ465337
Pholiotina filaris AFTOL-ID 1498 DQ494684 DQ470819 DQ465338
Psathyloma leucocarpum PBM3116 New Zealand HQ840659 HQ840660 HQ840662 HQ840661
Psathyrella candolleana ZRL20151400 China LT716063 KY418879 KY419075 KY419024 KY418945
Psathyrella panaeoloides SZMC-NL-2537 FM878022 FM876279
Psathyrella spadicea AFTOL-ID 1628 DQ494690 DQ470822 DQ465340
Psathyrella spadicea SZMC-NL-3996 FN396132 FN396180 FN396231
Pseudolepiota zangmui Z.W.Ge 2175 KY768928 MG742049 MG742106 KY768929
Pseudosperma rimosum PBM3901 USA JQ408772 MH220278 MK426218 MH249810 MK429971
Psilocybe montana AFTOL-ID 820 DQ494692 DQ470823 DQ465342
Psilocybe subaeruginosa PBM3218 Australia KF830079 KF830062 KF830071
Ripartitella brasiliensis A.E. Franco-Molano 499 (NY) Colombia AM946524 AM946465
Simocybe serrulata AFTOL-ID 970 DQ494696 AY745706 GU187755 DQ484053 DQ465343
Squamanita fimbriata LUG 12901 Switzerland MF444998
Squamanita mira HKAS107309A Jiangxi, China MW258848 MW258900 MW324490 MW289797 MW258927 & MW258879
Squamanita mira HKAS107737A Yunnan, China MW258849 MW258901 MW324491 MW289798 MW258928 & MW258880
Squamanita mira (holotype) HKAS100826A Yunnan, China MW258847 MW258899 MW324489 MW289796 MW258926 & MW258878
Squamanita odorata O-F-310485 Norway MG711653
Squamanita odorata O-F-146743 Norway MG711655
Squamanita odorata WRSL EF-2009-0001 Poland MF444999
Squamanita odorata K(M)178,855 England, UK MK192934
Squamanita odorata Ruaudin, France EF091828
Squamanita odorata DAOM225481 Honshu, Japan
Squamanita orientalis (holotype) HKAS74862A Yunnan, China MW258851 MW258903 MW324509 MW289799 MW258930 & MW258881
Squamanita paradoxa GG_BM05B Wales, UK EF535266
Squamanita paradoxa A. Leclerque s.n. Belgium MK377323
Squamanita paradoxa herb. A. Leclerque s.n. (BR) Belgium MK408620
Squamanita paradoxa TENN: 063549 Wales, UK GU296096 GU296095
Squamanita pearsonii E:204926 Scotland, UK MK192940
Squamanita pearsonii E:282464p Wales, UK MK192941
Squamanita pseudofimbriata WRSL RRy-2013-0001 Poland MF444997
Squamanita schreieri (epitype) ZT Myc 2158 Baden-Württemberg, Germany MW258852 MW258904 MW324510 MW289801 MW258931 & MW258882
Squamanita sororcula (holotype) HKAS107306A Yunnan, China MW258850 MW258902 MW324507 MW258929 & -
Squamanita umbonata TENN:57939 North Carolina, USA EF184305
Squamanita umbonata DAOM199323 Rhode Island, USA AF261508
Squamanita umbonata R.E.Halling7691(NY79971) Alajuela, Costa Rica MW258853 MW258905 MW324506 MW289800 MW258932 & MW258883
“Squamanita umbonata H.E.Bigelow17431(NY2776224) Massachusetts, USA MW258854 MW258906 MW258933 & MW258884
Squamanita umbonata C.BAS3808 (NY1840398) Massachusetts, USA MW258855 MW258907 MW258934 & MW258885
Squamanita umbonata HKAS107325A Liguria, Italy MW258856 MW258908 MW324508 MW258935 & MW258886
Stagnicola perplexa ALV17086 Denmark MK351604 MK353788 MK359087 MK353797
Stropharia ambigua AFTOL-ID 726 AY818350 AY646102 GU187756 DQ484054 DQ092924
Tubaria confragosa AFTOL-ID 498 DQ267126 AY700190 DQ408113 AY665776
Tubariomyces sp. BB6018 Zambia MK421965 EU600887 MK426220 EU600886 MK429974
Tulostoma calcareum GB MJ6965 Sweden NR_164015 KU519086 KU843881
Verrucospora flavofusca AFTOL-ID 655 China DQ241779 DQ470825 AY665783