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Table 1 Isolates and DNA sequences used in this study

From: Molecular reassessment of diaporthalean fungi associated with strawberry, including the leaf blight fungus, Paraphomopsis obscurans gen. et comb. nov. (Melanconiellaceae)

Families in Diaporthales Culture collection/Isolate Species Host Country GenBank Accessions
LSU ITS RPB2 TEF1
Apiosporopsidaceae CBS 771.79 Apiosporopsis carpinea Carpinus betulus Switzerland AF277130
Apoharknessiaceae CBS 111377* Apoharknessia insueta Eucalyptus pellita Brazil AY720814 JQ706083 MN271820
CBS 114575 Apoharknessia insueta Eucalyptus sp. Colombia MN172370 MN172402 MN271821
Asterosporiaceae MFLU 15–3555 Asterosporium asterospoermum Fagus sylvatica Italy MF190062
Auratiopycnidiellaceae CBS 132180*/ CPC 16371 Auratiopycnidiella tristaniopsis Tristaniopsis laurina Australia: New South Wales JQ685522 JQ685516 MN271825
CPC 16371 Auratiopycnidiella tristaniopsis Tristaniopsis laurina Australia: New South Wales MN172374 MN172405 MN271826
Coryneaceae D201 Coryneum umbonatum Quercus robur Austria MH674329 MH674329 MH674333 MH674337
CFCC 52319/isolate 89–1* Coryneum gigasporum Castanea mollissima China MH683557 MH683565
Cryphonectriaceae (subclade1) ATCC 38755 Cryphonectria parasitica Castanea dentata USA NG_027589 AY141856 DQ862017 EU222014
ATCC 48198/CMW7048 Cryphonectria parasitica Quercus virginiana USA JN940858 JN942325
CFCC 52150 Cryphonectria parasitica Castanea mollissima China MH514021 MG866018 MN271848
Cryphonectriaceae (subclade2) CBS 112916*/CMW62/CRY-98 Chrysoporthe australafricana Eucalyptus grandis South Africa AY194097 AF292041 MN271832
CBS 118654* Chrysoporthe cubensis Eucalyptus grandis Cuba MN172378 DQ368773 MN271834
Cytosporaceae CFCC 89982* Cytospora chrysosperma Ulmus pumila China KP310805 KP281261 KU710952 KP310848
CFCC 89633 Cytospora eleagni Elaeagnus angustifolia China KF765693 KF765677 KU710956 KU710919
CBS 202.36* Cytospora viridistroma Cercis canadensis Georgia MN172388 MN172408 MN271853
Diaporthaceae AR 3405*/CBS 135422 Diaporthe citri Citrus sp. USA MT378365 KC843311 MT383081 KC843071
AR 4855 Diaporthe novem Lactuca muralis France MT378366 MT378351 MT383082 MT383100
CBS 592.81* Diaporthe helianthi Helianthus annuus Serbia MT378370 NR_103698 KC343841
CBS 138594/AR 5193* Diaporthe eres Ulmus sp. Germany MT378367 KJ210529 MT383083 KJ210550
CBS 125529/AR 4658 Mazzantia galii Galium aparine France MH875041 MH863563 MT383101
Diaporthosporellaceae CBS 140348* Diaporthella cryptica Corylus avellana Italy MN172390 MN172409 MN271800 MN271854
CFCC 51994* Diaporthosporella cercidicola Cercis chinensis China KY852515 KY852492 MN271855
Diaporthostomataceae CFCC 52101 Diaporthostoma machili Machilus leptophylla China MG682021 MG682081 MG682041 MG682061
CFCC 52100* Diaporthostoma machili Machilus leptophylla China MG682020 MG682080 MG682040 MG682060
Dwiroopaceae CBS 109755* Dwiroopa lythri Lythrum salicaria USA MN172389 MN172410 MN271801 MN271859
CBS 143163* Dwiroopa punicae Punica granatum var. azadi USA:Minnesota MK510686 MK510676 MK510692
Erythrogloeaceae CBS 132185*/CPC 18819 Erythrogloeum hymenaeae Hymenaea courbaril Brazil JQ685525 JQ685519
CFCC 52106* Dendrostoma osmanthi Osmanthus fragrans China MG682013 MG682073 MG682033 MG682053
Folicryphiaceae CFCC 53025* Neocryphonectria chinensis Carpinus turczaninowii China MN172397 MN172414 MN271812 MN271893
CFCC 53027*/CFCC 53027 Neocryphonectria carpini Carpinus turczaninowi China MN172396 MN172413
Gnomoniaceae DMW 108/CBS 128442 Ophiognomonia rosae Fragaria vesca USA MT378355 JF514851 MT383086 JF514824
CBS 851.79 Ophiognomonia rosae Comarum palustre Finland MT378356 EU254930 MT383071 JQ414153
CBS 121226/AR4275* Gnomoniopsis fragariae Fragaria vesca USA EU255115 EU254824 EU219250 EU221961
DMW 63 Gnomoniopsis fragariae Fragaria × ananassa USA MT378357 MT378343 MT383072 MT383089
DMW 61 Gnomoniopsis fragariae Fragaria sp. USA MT378358 MT378344 MT383073 MT383090
VPRI 15547 Gnomoniopsis fragariae Fragaria × ananassa Australia MT378359 MT378345 MT383087 MT383091
CBS 275.51/ATCC 11430 Gnomoniopsis fragariae Fragaria sp. Canada:Ontario MH868373 EU254829 MT383088 MT383092
CBS 208.34 Gnomoniopsis fragariae Fragaria sp. France EU255116 EU254826 EU219284 EU221968
CBS 904.79 Gnomoniopsis tormentillae Potentilla erecta Switzerland EU255133 EU254856 GU320795
CBS 806.79 Gnomoniopsis comari Comarum palustre Finland EU255114 EU254821 GU320810
Harknessiaceae CBS 120033*/CFCC 53027 Harknessia gibbosa Eucalyptus delegatensis Tasmania EF110615 EF110615 MN271868
CBS 120030* Harknessia ipereniae Eucalyptus sp. Western Australia EF110614 EF110614 MN271870
Juglanconidaceae MAFF 410216 Juglanconis oblonga Juglans ailanthifolia Japan KY427153 KY427153 KY427203 KY427222
CBS 121083 Juglanconis juglandina Juglans regia Austria KY427148 KY427148 KY427198 KY427217
MAFF 410079* Juglanconis pterocaryae Pterocarya rhoifolia Japan KY427155 KY427155 KY427205 KY427224
Lamproconiaceae MFLUCC 15–0870 Lamproconium desmazieri Tilia tomentosa Russia KX430135 KX430134 MF377605 MF377591
MFLUCC 15–0872 Lamproconium desmazieri Tilia cordata Russia KX430139 KX430138 MF377593
Macrohilaceae CBS 140063* Macrohilum eucalypti Eucalyptus piperita Australia NG_058183 NR_154184 MN271810
CPC 10945 Macrohilum eucalypti Eucalyptus sp. New Zealand DQ195793 DQ195781
Mastigosporellaceae VIC44383*/COAD 2370 Mastigosporella pigmentata Qualea parviflora Brazil MG587928 MG587929
CBS 136421* Mastigosporella anisophylleae Anisophyllea sp. Zambia KF777221 KF779492 MN271892
Melanconidaceae CFCC 50474 Melanconis itoana Betula albosinensis China KT732974 KT732955 KT732987 KT733004
CFCC 50475* Melanconis stilbostoma Betula platyphylla China KT732975 KT732956 KT732988 KT733005
CFCC 50471 Melanconis betulae Betula albosinensis China KT732971 KT732952 KT732984 KT733001
Melanconiellaceae AU01 Greeneria uvicola Vitis vinifera Australia JN547720
OH35 Greeneria uvicola Vitis labrusca Ohio AF362570
AR 3457 Melanconiella spodiaea Carpinus betulus Austria AF408369 MT378352 MT383074 MT383093
AR 3462 Melanconiella spodiaea Carpinus betulus Austria AF408370 MT378353 MT383075 MT383094
AR 3830/CBS 131494 Melanconiella elegans Carpinus caroliniana USA JQ926264 JQ926264 JQ926335 JQ926401
CBS 125597 Melanconiella chrysodiscosporina Carpinus betulus Austria MH875191 MH863730
BPI 878343 Melanconiella ellisii Carpinus caroliniana USA JQ926271 JQ926271 JQ926339 JQ926406
MFLU 15–1112* Microascospora rubi Rubus ulmifolius Italy MF190099 MF190154 MF377611 MF377582
MFLU 17–0883 Microascospora rubi Rubus ulmifolius Italy MF190098 MF190153 MF377581
M1261/DS016 Paraphomopsis obscurans Fragaria × ananassa USA MT378360 MT378346 MT383076 MT383095
CBS 143829/M1262/DS020* Paraphomopsis obscurans Fragaria × ananassa USA MT378361 MT378347 MT383077 MT383096
M1259/DS013 Paraphomopsis obscurans Fragaria × ananassa USA MT378362 MT378348 MT383078 MT383097
M1333/DS133 Paraphomopsis obscurans Fragaria × ananassa USA MT378363 MT378349 MT383079 MT383098
M1278/DS055 Paraphomopsis obscurans Fragaria × ananassa USA MT378364 MT378350 MT383080 MT383099
strain 1–1 Paraphomopsis obscurans (as. Sphaeronaemella fragariae) Fragaria sp. China HM854850
strain 1–3 Paraphomopsis obscurans (as. Sphaeronaemella fragariae) Fragaria sp. China HM854852
strain 12 Paraphomopsis obscurans (as. Sphaeronaemella fragariae) Fragaria sp. China HM854849
Phaeoappendicosporaceae MFLUCC 13–0161*/MFLU 12–2131 Phaeoappendicospora thailandensis Quercus sp. Italy MF190102 MF190157
Prosopidicolaceae CBS 113529* Prosopidicola mexicana Prosopis glandulosa USA KX228354 AY720709
CBS 141298/CPC 27478* Prosopidiocola albizziae Albizzia falcataria Malaysia KX228325 KX228274
Pseudomelanconidaceae CFCC 52787* Neopseudomelanconis castaneae Castanea mollissima China MH469164 MH469162
CFCC 52110* Pseudomelanconis caryae Carya cathayensis China MG682022 MG682082 MG682042 MG682062
Pseudoplagiostomaceae CBS 115722/CMW 6674 Pseudoplagiostoma oldii Eucalyptus camaldulensis Australia GU973610 GU973535 GU973565
CPC 14161 Pseudoplagiostoma eucalypti Eucalyptus camaldulensis Vietnam GU973604 GU973510 GU973540
Schizoparmaceae CBS 112640*/STE-U 3904 Coniella eucalyptorum Eucalyptus grandis × tereticornis Queensland AY339290 AY339338 KX833452 KX833637
CBS 110394* Coneilla peruensis soil in rain forest Peru KJ710441 KJ710463 KX833499 KX833695
Stilbosporaceae CBS 122529* Stilbospora longicornuta Carpinus betulus Austria KF570164 KF570164 KF570194 KF570232
CBS 117025* Stegonsporium acerophilum Acer saccharum USA: Tennessee EU039993 EU039982 KF570173 EU040027
Sydowiellaceae AR 3809 Chapeckia nigrospora Betula sp. USA EU683068
F129/P3/1* Paragnomonia fragariae Fragaria × ananassa Latvia MK524447 MK524430 MK524466
GF300/M1530 Paragnomonia fragariae Fragaria sp. France MT378368 MT383084 MT383102
GF301/M1531 Paragnomonia fragariae Fragaria sp. France MT378369 MT383085 MT383103
MFLU 16–2864* Sillia karstenii Centaurea sp. Italy KY523500 KY523482 KY501636
Synnemasporellaceae CFCC 52094 Synnemasporella aculeans Rhus chinensis China MG682026 MG682086 MG682046 MG682066
CFCC 52097* Synnemasporella toxicodendri Toxicodendron sylvestre China MG682029 MG682089 MG682049 MG682069
Tirisporellaceae BCC 00018 Thailandiomyces bisetulosus Licuala longicalycata Thailand EF622230
BCC 38312 Tirisporella beccariana Nypa fruticans Thailand JQ655449
Tubakiaceae CBS 129012* Tubakia iowensis Quercus macrocarpa USA MG591971 JF704194 MG603576
CBS 127490* Tubakia seoraksanensis Quercus mongolica South Korea KP260499 MG591907 MG592094
CBS 114386 Tubakia dryina Quercus robur New Zealand JF704188 MG591852 MG592040
CPC 13806 Racheliella wingfieldiana Syzygium guineense South Africa MG592006 MG591911 MG976487 MG592100
CBS 189.71* Oblongisporothyrium castanopsidis Castanopsis cuspidata Japan MG591943 MG591850 MG592038
CBS 124732 Oblongisporothyrium castanopsidis Castanopsis cuspidata Japan MG591942 MG591849 MG976453 MG592037
MUCC 2293* Paratubakia subglobosoides Quercus glauca Japan MG592010 MG591915 MG976491 MG592104
CBS 193.71* Paratubakia subglobosa Quercus glauca Japan MG592009 MG591914 MG976490 MG592103
CPC 31361 Sphaerosporithyrium mexicanum Quercus eduardii Mexico MG591988 MG591894 MG592081
CPC 33021* Sphaerosporithyrium mexicanum Quercus eduardii Mexico MG591990 MG591896 MG976473 MG592083
MUCC 2304* Involutiscutellula rubra Quercus phillyraeoides Japan MG591995 MG591901 MG976478 MG592088
CBS 192.71* Involutiscutellula rubra Quercus phillyraeoides Japan MG591993 MG591899 MG976476 MG592086
Outgroup (Magnaporthales) MFLU 18–2323*/MFLUCC 18–1337 Ceratosphaeria aquatica submerged wood China MK835812 MK828612 MN156509 MN194065
CG-4/M83* Pyricularia grisea Digitaria sp. USA JX134683 JX134671 JX134697
  1. Abbreviations of the culture collections: ATCC: American Type Culture collection; CMW:FABI fungal culture collection; CBS:CBS-KNAW culture collection, Westerdijk Fungal Biodiversity Institute; MFLU: Mae Fah Luang University Herbarium; MFLUCC: Mae Fah Luang University Culture Collection; CFCC: China Forestry Culture Collection Center; STE-U: culture collection of the Department of Plant Pathology at the University of Stellenbosch; AR, M, DMW: Cultures housed at MNGDBL, USDA-ARS, Beltsville, Maryland; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute; MUCC: Murdoch University Culture Collection; BCC: BIOTEC Culture Collection, Bangkok, Thailand; VPRI: Victoria Plant Pathology Herbarium. *Ex-type/epitype/neotype cultures or specimens are indicated by asterisks. Newly generated sequences in this study are bold