Table 1 Table of taxa. Sequences in the tefA and tubB alignments used for the multigene phylogeny
Species | Isolate number | Allele | Host | Loc | Genbank accession No | References | |
|---|---|---|---|---|---|---|---|
tubB | tefA | ||||||
Claviceps purpurea | 20.1 | Secale cereale | KP689578 | HQ026480 | – | ||
Epichloë amarillans | E4668 | Agrostis hyemalis | N.A | KF042042 | KP689563 | Schardl et al. (2013) | |
E. aotearoae | e899 | Echinopogon ovatus | NZ | KF042049 | KP689565 | Schardl et al. (2013) | |
E. australiensis | AL1759f | allele 1 | Dichelachne micrantha | NZ | MN150703 | MN150705 | Leuchtmann et al. (2019) |
E. australiensis | AL1759p | allele 2 | Dichelachne micrantha | NZ | MN150704 | MN150706 | Leuchtmann et al. (2019) |
E. baconii | 9707 | Agrostis tenuis | CH | KF811579 | KF811547 | Ekanayake et al. (2013) | |
E. brachyelytri | E4804 | Brachyelytrum erectum | US | KF042060 | KP689564 | Schardl et al. (2013) | |
E. bromicola | AL0426 2 E7561 | Thinopyrum intermedium | KP689571 | KP689559 | – | ||
E. cabralii | BlaTG 2 | allele 1 | Bromus laevipes | JX679191 | JX679184 | – | |
E. cabralii | BlaTG 2 | allele 2 | Bromus laevipes | JX679192 | JX679185 | – | |
E. canadensis | CWR 34 | allele 1 | Elymus canadensis | MX | KF719190 | KF719188 | Charlton et al. (2012) |
E. canadensis | CWR 34 | allele 2 | Elymus canadensis | MX | KF719191 | KF719189 | Charlton et al. (2012) |
E. chisosa | 134 | allele 1 | Stipa eminens | US | AF457471 | AF457509 | Moon et al. (2004) |
E. chisosa | 134 | allele 2 | Stipa eminens | US | AF457470 | AF457508 | Moon et al. (2004) |
E. chisosa | 134 | allele 3 | Stipa eminens | US | AF457472 | AF457510 | Moon et al. (2004) |
E. coenophiala | Greek type 1 | allele 1 | Lolium arundinaceum | GR | JX028244 | JX028257 | Takach et al. (2012) |
E. coenophiala | Greek type 1 | allele 2 | Lolium arundinaceum | GR | JX028245 | JX028258 | Takach et al. (2012) |
E. coenophiala | Greek type 1 | allele 3 | Lolium arundinaceum | GR | JX028246 | JX028259 | Takach et al. (2012) |
E. coenophiala | e19 | allele 1 | Lolium arundinaceum | KP689577 | KP689554 | – | |
E. coenophiala | e19 | allele 2 | Lolium arundinaceum | KP689576 | KP689566 | – | |
E. coenophiala | e19 | allele 3 | Lolium arundinaceum | KP689575 | KP689556 | – | |
E. danica | D2 5 | allele 1 | Hordelymus europaeus | DK | JF718475 | JF718528 | Oberhofer and Leuchtmann (2012) |
E. danica | D2 5 | allele 2 | Hordelymus europaeus | DK | JF718476 | JF718529 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | A1 1 | allele 1 | Hordelymus europaeus | IT | JF718437 | JF718490 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | A1 1 | allele 2 | Hordelymus europaeus | IT | JF718438 | JF718491 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | A4 5 | allele 1 | Hordelymus europaeus | IT | JF718440 | JF718493 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | A4 5 | allele 2 | Hordelymus europaeus | IT | JF718441 | JF718494 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | C5a 1 | allele 1 | Hordelymus europaeus | DE | JF718469 | JF718522 | Oberhofer and Leuchtmann (2012) |
E. disjuncta | C5a 1 | allele 2 | Hordelymus europaeus | DE | JF718470 | JF718523 | Oberhofer and Leuchtmann (2012) |
E. elymi | ATCC 201553 | Elymus virginicus | AF062428 | AF457498 | – | ||
E. festucae | Fl1 E894 | Festuca trachyphylla | NZ | KF042045 | KP689555 | Schardl et al. (2013) | |
E. festucae var. lolii | 15335 | Lolium perenne | IT | KP834584 | KP834548 | Hettiarachchige et al. (2015) | |
E. gansuensis | E7080 | Achnatherum inebrians | CN | KF042053 | KP689495 | Schardl et al. (2013) | |
E. glyceriae | E277 | Glyceria striata | CA | KF042046 | KP689560 | Schardl et al. (2013) | |
E. guerinii | CBS 113029 | allele 1 | Melica ciliata | FR | EF422748 | - | Moon et al. (2007) |
E. guerinii | CBS 113029 | allele 2 | Melica ciliata | FR | EF422749 | - | Moon et al. (2007) |
E. hordelymi | A51 5 | allele 1 | Hordelymus europaeus | IT | JF718442 | JF718495 | Oberhofer and Leuchtmann (2012) |
E. hordelymi | A51 5 | allele 2 | Hordelymus europaeus | IT | JF718443 | JF718496 | Oberhofer and Leuchtmann (2012) |
E. inebrians | e7478 | Achnatherum inebrians | KP689490 | KP689493 | – | ||
E. melicicola | 822 | allele 1 | Melica racemosa | ZA | AF323383 | AF323404 | Moon et al. (2002) |
E. melicicola | 822 | allele 2 | Melica racemosa | ZA | AF323383 | - | Moon et al. (2002) |
E. mollis | AL9924 | Holcus mollis | KF042061 | KP689567 | Schardl et al. (2013) | ||
E. novae-zelandiae | AL0725 2 | allele 1 | Poa matthewsii | NZ | MN013155 | MN013158 | Leuchtmann et al. (2019) |
E. novae-zelandiae | AL0725 2 | allele 2 | Poa matthewsii | NZ | MN013154 | MN013157 | Leuchtmann et al. (2019) |
E. novae-zelandiae | AL0725 2 | allele 3 | Poa matthewsii | NZ | MN013153 | MN013156 | Leuchtmann et al. (2019) |
E. schardlii | PA 10 10 | allele 1 | Poa alsodes | US | MF156224 | KT749529 | Shymanovich et al. (2017) |
E. schardlii | PA 10 10 | allele 2 | Poa alsodes | US | MF156223 | KT749530 | Shymanovich et al. (2017) |
E. scottii | DSM112488 | Melica uniflora | DE | MZ198217 | MZ224336 | * | |
E. scottii | DSM111774 | Melica uniflora | DE | MZ198218 | MZ224334 | * | |
E. scottii | DSM111775 | Melica uniflora | DE | MZ198219 | MZ224335 | * | |
E. sibirica | MTI I03 | Achnatherum sibiricum | CN | FJ769412 | FJ769418 | Zhang et al. (2009) | |
E. siegelii | ATCC 74483 type e915 | allele 1 | Festuca pratensis | DE | AF308139 | AF308132 | Craven et al. (2001) |
E. siegelii | ATCC 74483 type e915 | allele 2 | Festuca pratensis | DE | AF308138 | AF308133 | Craven et al. (2001) |
E. sinensis | 57A | allele 1 | Festuca sinensis | CN | KX685661 | KX685663 | Tian et al. (2020) |
E. sinensis | 57A | allele 2 | Festuca sinensis | CN | KX685660 | KX685662 | Tian et al. (2020) |
E. stromatolonga | Chsa102 | Calamagrostis epigeios | CN | KC463811 | KC463806 | – | |
E. sylvatica | GR 10156 E7368 | Brachypodium sylvaticum | KP689573 | KP689552 | - | ||
E. sylvatica subsp. pollinensis | A2 6 | Hordelymus europaeus | IT | JF718439 | JF718492 | Oberhofer and Leuchtmann (2012) | |
E. tembladerae | ni 269648 | allele 1 | Hordeum comosum | KX154249 | KX173839 | – | |
E. tembladerae | ni 269648 | allele 2 | Hordeum comosum | KX154248 | KX173838 | – | |
E. typhina | 9340 | Poa pratenis | CH | KF811577 | KF811545 | Ekanayake et al. (2013) | |
E. typhina | E8 | Lolium perenne | US | MF928013 | MF928030 | Campbell et al. (2017) | |
E. typhina subsp. poae | BlaTG 1 | Bromus laevipes | JX679195 | JX679188 | – | ||
E. typhina var. aonikenkana | 2642 | Bromus setifolius | AR | KF534048 | KF534085 | Mc Cargo et al. (2014) | |
E. uncinata | E81 | Festuca pratensis | KF811583 | KF811551 | Ekanayake et al. (2013) | ||