Table 4 Pan-genomes of T. caries, T. controversa, and T. laevis
Species | Isolates | Pan-genome | Core genome | Accessory genome | Singleton | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
CDS | Orthology cluster | CDS | Orthology cluster | % | CDS | Orthology cluster | % | CDS | % | ||
T. caries | 5 | 50,056 | 9187 | 46,492 | 7020 | 92.8 | 2238 | 2167 | 4.5 | 1284 | 2.5 |
T. controversa | 7 | 69,702 | 9732 | 63,728 | 6238 | 91.4 | 4297 | 3494 | 6.1 | 1677 | 2.4 |
T. laevis | 4 | 40,076 | 9153 | 38,264 | 7200 | 95.4 | 1187 | 1953 | 2.9 | 625 | 1.5 |