Table 1 Genome assembly statistics of the four Pyrenophora teres isolates from barley grass
From: IMA genome‑F17
Ptm14015 | HRS10128 | Ptt12013 | SNB172 | |
|---|---|---|---|---|
Assembly | ||||
Total assembly size (Mbp) | 42.42 | 42.99 | 43.03 | 41.31 |
Number of contigs (≥ 1000 bp) | 1295 | 956 | 1225 | 3384 |
N50 (kb) | 111.57 | 331.43 | 109.55 | 348.92 |
Largest contigs (kb) | 596.68 | 1508.41 | 712.94 | 323.58 |
GC-content (%) | 46.71 | 46.57 | 46.59 | 47.92 |
BUSCO analysis | ||||
Completeness | 94.5 | 96.3 | 96.1 | 95.5 |
Complete and single-copy BUSCOs | 3564 | 3630 | 3628 | 3604 |
Complete and duplicated BUSCOs | 14 | 14 | 10 | 11 |
Fragmented BUSCOs | 28 | 26 | 27 | 40 |
Missing BUSCOs | 180 | 116 | 121 | 131 |
Repeat annotation | ||||
DNA repeat elements (%) | 1.16 | 1.24 | 1.52 | 2.66 |
LINEs (%) | 0.28 | 3.20 | 0.31 | 1.16 |
LTR (%) | 18.98 | 17.83 | 20.70 | 15.87 |
Unclassified (%) | 6.26 | 4.95 | 5.28 | 6.88 |
Simple repeats (%) | 0.73 | 0.66 | 0.73 | 0.66 |
Total gene annotation | 11,069 | 11,038 | 11,068 | 11,314 |