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Table 1 Results of the site-wise log-likelihoods generated under possible associations of species in base edges. The first column gives the possible associations for which the site-wise log-likelihoods were produced. Columns show the support values for the approximately unbiased (AU) test, the observed log-likelihood differences of the edges (OBS), Bootstrap probability tests (NP, BP; and PP), Kishino-Hasegawa (KH) test, Shimodaira-Hasegawa (SH) test, weighted Kishino-Hasegawa (WKH) test, and the weighted Shimodaira-Hasegawa (WSH) test.

From: The inclusion of downy mildews in a multi-locus-dataset and its reanalysis reveals a high degree of paraphyly in Phytophthora

Possible associations

AU

OBS

NP

BP

PP

KH

SH

WKH

WSH

(4.2, DM)

0,983

−106,9

0,992

0,993

1,000

0,966

0,992

0,974

0,989

(1,4, DM)

0,983

−106,9

0,992

0,993

1,000

0,966

0,992

0,974

0,989

(1,2, 4, DM)

0,983

−106,9

0,992

0,993

1,000

0,966

0,992

0,974

0,989

(4, DM)

0,979

−39,4

0,985

0,985

1,000

0,901

0,988

0,94

0,996

(1c,1b)

0,882

−32,7

0,981

0,981

1,000

0,860

0,925

0,925

0,925

(3, 6)

0,713

−28,2

0,918

0,919

1,000

0,753

0,753

0,753

0,753

(1–8, 9.1, DM)

0,679

−14,1

0,648

0,646

1,000

0,721

0,909

0,666

0,916

(1–4, 6, DM)

0,670

−5,6

0,47

0,467

0,997

0,592

0,967

0,592

0,967

(2b, 2.2)

0,644

−5,1

0,407

0,399

0,973

0,593

0,911

0,593

0,927

(5,7)

0,617

−14,7

0,741

0,742

1,000

0,653

0,807

0,653

0,831

(1,2, 4, 5, 7, DM)

0,555

5,6

0,104

0,103

0,002

0,408

0,949

0,408

0,951

(1,2, 4, 5, DM)

0,440

14,7

0,251

0,252

0,000

0,347

0,815

0,347

0,806

(1–6, DM)

0,383

14,7

0,259

0,258

0,000

0,347

0,678

0,347

0,676

(2.1,2b)

0,356

5,1

0,593

0,601

0,027

0,407

0,585

0,407

0,569

(9.1,9.2)

0,321

14,1

0,352

0,354

0,000

0,279

0,678

0,334

0,668

(3,5–7)

0,302

5,8

0,093

0,091

0,000

0,232

0,911

0,232

0,821

(1–5, 7, DM)

0,287

28,2

0,082

0,081

0,000

0,247

0,636

0,247

0,645

(1–4, DM)

0,287

28,2

0,082

0,081

0,000

0,247

0,636

0,247

0,645

(1b,1.1)

0,118

32,7

0,019

0,019

0,000

0,140

0,596

0,075

0,330

(3, 6, DM)

0,022

106,9

0,007

0,006

0,000

0,034

0,093

0,015

0,065

(1,4.1)

0,021

39,4

0,015

0,015

0,000

0,099

0,406

0,031

0,156

(1,4)

0,017

106,9

0,008

0,007

0,000

0,034

0,093

0,015

0,051

(1, 2, 4, 5)

0,017

106,9

0,008

0,007

0,000

0,034

0,093

0,015

0,051

(1, 2, 4)

0,017

106,9

0,008

0,007

0,000

0,034

0,093

0,015

0,051

  1. The following species were randomly chosen as representatives for the corresponding clades and subclades in the statistical analysis — 1c, Phytophthora cactorum; 1b, P. nicotianae; 1c, P. iranica; 1.1, P. infestans; 2ab, P. capsici; 2.1, P. bisheria; 2.2, P. multivesiculata; 3, P. nemorosa; 4.1, P. quercina; 4.2, P. palmivora; 5, P. katsurae; 6, P. humicola; 1, P. europaea; 8, P. ramorum; 9.1, P. polonica; 9.2, P. captiosa; 10, P. boehmeriae; DM, Pseudoperonospora cubensis.