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Table 2 Fungal taxa used for phylogenetic analysis with GenBank accession numbers for small subunit (SSU) and large subunit (LSU) sequences, including their main characteristics.

From: Gelatinomyces siamensis gen. sp. nov. (Ascomycota, Leotiomycetes, incertae sedis) on bamboo in Thailand

Ingroup

GenBank accession no. (SSU, LSU)

Origin (substrate, country)

Main characteristics

Reference

Class Sordariomycetes

    

Cainia graminis

AF431948, AF431949

Sesleria albicans, France

Stromatic perithecial, unitunicate with pore, saprophytic, plant parasitic or endophytic

Lumbsch et al. (2005)

Chaetomium globosum

AB048285, AY346272

Indoor environment, Germany

 

Huhndorf et al. (2004), Okane et al. (2001)

Diatrype disciformis

DQ471012, DQ470964

Decayed wood, Netherlands

 

Spatafora et al. (2006)

Hypocrea americana

AY544693, AY544649

Fomitopsis pinicola, USA

 

Lutzoni et al. (2004)

Sordaria fimicola

AY545724, AY545728

Dung, Canada

 

Cai et al. (2006)

Xylaria acuta

AY544719, AY544676

Decayed wood, USA

 

Rogers (1984)

Xylaria hypoxylon

AY544692, AY544648

Downed rotting wood, USA

 

Spatafora et al. (2006)

Class Leotiomycetes

    

Botryotinia fuckeliana

AY544695, AY544651

 

Apothecial or cleistothecial, unitunicate and inoperculate, saprophytic, plant parasitic, some species known only anamorphic i.e. Collophora

Hirschhauser & Frohlich (2007)

Bulgaria inquinans

DQ471008, DQ470960

Germany

 

Spatafora et al. (2006)

Collophora rubra

GQ154628, GQ154608

Wood necrosis close to pruning wound, South Africa

 

Damm et al. (2010)

Crinula calciiformis

AY544729, AY544680

  

Lutzoni et al. (2004)

Monilinia fructicola

AY544724, AY544683

Fruit, USA

 

Fulton & Brown (1997)

Neofabraea malicorticis

AY544706, AY544662

Apples, USA

 

Lutzoni et al. (2004)

Pezicula carpinea

DQ471016, DQ470967

Carpinus caroliniana, Canada

 

Spatafora et al. (2006)

Potebniamyces pyri

DQ470997, DQ470949

Cankered bark, USA

 

Spatafora et al. (2006)

Class Lecanoromycetes

    

Diploschistes thunbergianus

AF274112, AF274095

Australia

Apothecial, unitunicate, rostrate asci, mostly lichenized

Lumbsch et al. (2005)

Lobaria scrobiculata

AY584679, AY584655

USA

 

Lutzoni et al. (2004)

Trapella placodioides

AF119500, AF274103

Wall, UK

 

Lumbsch et al. (2005)

Class Lichinomycetes

    

Lempholemma polyanthes

AY548805, AF356691

USA

Apothecial, bitunicate, lichenized

Lutzoni et al. (2004)

Peltula auriculata

DQ832332, DQ832330

  

Miadlikowska et al. (2006)

Peltula umbilicata

DQ782887, AF356689

  

Miadlikowska et al. (2006)

Class Eurotiomycetes

    

Eremascus albus

M83258, AY004345

Dried fruit, UK

Cleistothecial, non-flssitunicate, saprophytic or plant parasitic

Berbee & Taylor (1992)

Eurotium rubrum

U00970, AY004346

  

Lumbsch et al. (2005a)

Penicillium expansum

DQ912698, AF003359

Fruit, USA

 

Seifert & Louis-Seize (2000)

Exophiala dermatitidis

DQ823107, DQ823100

Human, USA

 

James et al. (2006)

Glyphium elatum

AF346419, AF346420

Salix, USA

 

Lindemuth et al. (2001)

Ramichloridium anceps

DQ823109, DQ823102

Soil under Thuja plicata, Canada

 

James et al. (2006)

Class Dothideomycetes

    

Order Botryosphaeriales

    

Botryosphaeria ribis

DQ678000, DQ678053

Ribes, USA

Pseudothecial, flssitunicate asci, saprophytic or plant parasitic

Schoch et al. (2006)

Botryosphaeria stevensii

DQ678012, DQ678064

Fraxinus excelsior, Netherlands

 

Schoch et al. (2006)

Guignardia bidwellii

DQ678034, DQ678085

Parthenocissus tricuspidata

 

Schoch et al. (2006)

Order Capnodiales

    

Catenulostroma abetis

DQ678040, DQ678092

Abies, Germany

Pseudothecial, flssitunicate asci, saprophytic or plant parasitic

Schoch et al. (2006)

Cercospora beticola

DQ678039, DQ678091

Beta vulgaris, Italy

 

Schoch et al. (2006)

Microxyphium citri

AY016340, AY004337

Fruit of Citrus sinensis, Spain

 

Lumbsch et al. (2005)

Mycosphaerella punctiformis

DQ471017, DQ470968

Dead fallen leaves of Quercus robur, Netherlands

 

Spatafora et al. (2006)

Scorias spongiosa

DQ678024, DQ678075

Aphid

 

Schoch et al. (2006)

Order Dothideales

    

Aureobasidium pullulans

DQ471004, DQ470956

Fruit of Vitis vinifera, France

Pseudothecial, flssitunicate asci, pseudoparaphyses absent, mainly saprophytic

Spatafora et al. (2006)

Delphinella strobiligena

AY016341, AY016358

Cone of Pinus halepensis, Greece

 

Lumbsch & Lindemuth (2001)

Discosphaerina fagi

AY016342, AY016359

Leaf of Populus, UK

 

Lumbsch & Lindemuth (2001)

Dothidea ribesia

AY016343, AY016360

Cult of Ribes, Switzerland

 

Lumbsch et al. (2005)

Stylodothis puccinioides

AY016353, AY004342

Viburnum lantana, Switzerland

 

Lumbsch et al. (2005)

Order Myriangiales

    

Cladosporium cladosporioides

DQ678004, DQ678057

Leaf of Arundo, England

Pseudothecial, globosa asci, non-ostiolar, saprophytic or plant parasitic

Schoch et al. (2006)

Davidiella tassiana

DQ678022, DQ678074

Human skin, Netherlands

 

Schoch et al. (2006)

Elsinoe centrolobi

DQ678041, DQ678094

Centrolobium robustum, Brazil

 

Schoch et al. (2006)

Myriangium duriaei

AY016347, DQ678059

Chrysomphalus aonidium, Argentina

 

Lumbsch & Lindemuth (2001)

Order Pleosporales

    

Arthopyrenia salicis

AY538333, AY538339

Bark of Salix, Netherlands

Perithecoid pseudothecial, ostiolar, non-lichenized or lichenized with fissitunicate asci and pseudoparaphyses present

Lumbsch et al. (2005)

Cucurbitaria elongata

DQ678009, DQ678061

Cytisus sessilifolius, France

 

Schoch et al. (2006)

Dendrographa leucophaea

AY548803, AY548810

  

Lutzoni et al. (2004)

Lecanactis abietina

AY548805, AY548812

  

Lutzoni et al. (2004)

Neotestudina rosatii

DQ384069, DQ384107

Seed of Cuminum cyminum imported from India, Japan

 

Kruys et al. (2006)

Pleospora herbarum

DQ247812, DQ247804

Leaf of Medicago sativa, India

 

Schoch et al. (2006)

Setosphaeria monoceras

AY016352, AY016368

  

Lumbsch & Lindemuth (2001)

Trematosphaeria heterospora

AY016354, AY016369

Iris, Switzerland

 

Lumbsch et al. (2005)

Westerdykella cylindrica

AY016355, AY004343

Cow dung, Kenya

 

Lumbsch et al. (2005)

Order Insertae sedis, Family Tubeufiaceae

   

Helicomyces lilliputeus

AY856942, AY856899

Rotten dicotyledonous wood, USA

Pseudothecial, fissitunicate

Tsui & Berbee (2006)

Helicomyces roseus

DQ678032, DQ678083

Submerged bark, Switzerland

 

Schoch et al. (2006)

Tubeufla cerea

AY856947, AY856903

  

Tsui & Berbee (2006)

Class Arthoniomycetes

    

Arthonia dispersa

AY571379, AY571381

Syringa vulgaris, Sweden

Fissitunicate, mostly lichenized

Lumbsch et al. (2005)

Dendrographa leucophaea

AY548803, AY548810

  

Lutzoni et al. (2004)

Lecanactis abietina

AY548805, AY548812

  

Lutzoni et al. (2004)

Unknown

    

Gelatinomyces siamensis

Isolate KKUK1

JX219377, JX219381

Bambusa nutans, Thailand

Apothecial, aggregated, embedded in gelatinous ball

This study

Isolate KKUK2

JX219378, JX219382

   

Outgroup Class Orbiliomycetes

   

Orbilia auricolor

DQ471001, DQ470953

Soil, UK

Apothecial, non-fissitunicate

Spatafora et al. (2006)