General dataset parameters
|
Apn2
|
ITS
|
Matl
|
Sod2
|
All data
|
---|
DNA characters
|
798
|
401
|
1297
|
519
|
3015
|
Coded gap characters
|
2
|
7
|
61
|
13
|
84
|
Total aligned characters
|
800
|
408
|
1358
|
532
|
3098
|
Constant characters
|
494
|
276
|
533
|
306
|
1609
|
Parsimony informative characters
|
275
|
54
|
691
|
189
|
1209
|
PHI tests for recombination
1
| | | | | |
All C. caudatum s.l. isolates
|
YES
|
NO
|
YES
|
YES
| |
|
p = 0.0086
|
p = 0.2487
|
p = 0
|
p = 0
| |
C. caudatum s.l. isolates, excluding incongruent taxa2
|
YES p = 0.0055
|
NO p = 1.0
|
NO p = 1.0
|
NO p = 1.0
| |
Delta score
3
|
0.164
|
0.067
|
0.188
|
0.256
| |
Q-residual score
3
|
0.022
|
0.005
|
0.08
|
0.122
| |
- 1Pairwise homoplasy index (PHI) test performed using a dataset composed of Colletotrichum in the Caudatum subaggregate: C. alcornii, C. baltimorense, C. caudatum, C. somersetense, C. zoysiae, and isolates CBS112172 and MAFF 305700.
- 2Incongruent taxa = CBS113172 and NY07-CC04.
- 3Where delta score and Q-residual score=0 when distances between taxa exactly fit a tree. Scores ranging from 0 (tree-like) to 1 (non-treelike).