TY - CHAP AU - Alexander, S. A. AU - Horner, W. E. AU - Lewis, K. J. ED - Harrington, T. C. ED - Cobb, F. W. PY - 1988 DA - 1988// TI - Leptographium procerum as a pathogen of pines BT - Leptographium Root Diseases on Conifers PB - American Phytopathological Society Press CY - St Paul, MN ID - Alexander1988 ER - TY - JOUR AU - Al-Subhi, A. M. AU - Al-Adawi, A. O. AU - Wyk, M. AU - Deadman, M. W. PY - 2006 DA - 2006// TI - Ceratocystis omanensis, a new species from diseased mango trees in Oman JO - Mycological Research VL - 110 UR - https://doi.org/10.1016/j.mycres.2005.08.007 DO - 10.1016/j.mycres.2005.08.007 ID - Al-Subhi2006 ER - TY - JOUR AU - Amselem, J. AU - Cuomo, C. A. AU - Kan, J. A. L. AU - Viaud, M. AU - Benito, E. P. PY - 2011 DA - 2011// TI - Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea JO - PLoS Genetics VL - 7 UR - https://doi.org/10.1371/journal.pgen.1002230 DO - 10.1371/journal.pgen.1002230 ID - Amselem2011 ER - TY - JOUR AU - Barnes, I. AU - Nakabonge, G. AU - Roux, J. AU - Wingfield, B. D. AU - Wingfield, M. J. PY - 2005 DA - 2005// TI - Comparison of populations of the wilt pathogen Ceratocystis albifundus in South Africa and Uganda JO - Plant Pathology VL - 54 UR - https://doi.org/10.1111/j.1365-3059.2005.01144.x DO - 10.1111/j.1365-3059.2005.01144.x ID - Barnes2005 ER - TY - STD TI - Blanco-Ulate, B, Allen, G, Powell, ALT, Cantu, D (2013) Draft genome sequence of Botrytis cinerea BcDW1, inoculum for noble rot of grape berries. Genome Announcements 1: e00252-13. ID - ref5 ER - TY - JOUR AU - Blin, K. a. i. AU - Medema, M. a. r. n. i. x. H. AU - Kazempour, D. a. n. i. y. a. l. AU - Fischbach, M. i. c. h. a. e. l. A. AU - Breitling, R. a. i. n. e. r. AU - Takano, E. r. i. k. o. AU - Weber, T. i. l. m. a. n. n. PY - 2013 DA - 2013// TI - antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers JO - Nucleic Acids Research VL - 41 UR - https://doi.org/10.1093/nar/gkt449 DO - 10.1093/nar/gkt449 ID - Blin2013 ER - TY - BOOK AU - Boa, E. R. PY - 2004 DA - 2004// TI - Wild Edible Fungi: a global overview of their use and importance to people PB - Agriculture Organization CY - Rome ID - Boa2004 ER - TY - JOUR AU - Boetzer, M. AU - Henkel, C. V. AU - Jansen, H. J. AU - Butler, D. AU - Pirovano, W. PY - 2011 DA - 2011// TI - Scaffolding pre-assembled contigs using SSPACE JO - Bioinformatics VL - 27 ID - Boetzer2011 ER - TY - JOUR AU - Boetzer, M. AU - Pirovano, W. PY - 2012 DA - 2012// TI - Toward almost closed genomes with GapFiller JO - Genome Biology VL - 13 UR - https://doi.org/10.1186/gb-2012-13-6-r56 DO - 10.1186/gb-2012-13-6-r56 ID - Boetzer2012 ER - TY - JOUR AU - Boisvert, S. AU - Laviolette, F. AU - Corbeil, J. PY - 2010 DA - 2010// TI - Ray: simultaneous assembly of reads from a mix of high- throughput sequencing technologies JO - Journal of Computational Biology VL - 17 UR - https://doi.org/10.1089/cmb.2009.0238 DO - 10.1089/cmb.2009.0238 ID - Boisvert2010 ER - TY - JOUR AU - Buermans, H. P. J. AU - Dunnen, J. T. PY - 2014 DA - 2014// TI - Next generation sequencing technology: Advances and applications JO - Biochimica et Biophysica Acta VL - 1842 UR - https://doi.org/10.1016/j.bbadis.2014.06.015 DO - 10.1016/j.bbadis.2014.06.015 ID - Buermans2014 ER - TY - JOUR AU - Cantarel, B. L. AU - Korf, I. AU - Robb, S. M. AU - Parra, G. AU - Ross, E. PY - 2008 DA - 2008// TI - MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes JO - Genome Research VL - 18 UR - https://doi.org/10.1101/gr.6743907 DO - 10.1101/gr.6743907 ID - Cantarel2008 ER - TY - JOUR AU - Carbone, I. AU - Kohn, L. M. PY - 1993 DA - 1993// TI - Ribosomal DNA sequencing divergence within internal transcribed spacer 1 of the Sclerotiniaceae JO - Mycologia VL - 85 UR - https://doi.org/10.1080/00275514.1993.12026293 DO - 10.1080/00275514.1993.12026293 ID - Carbone1993 ER - TY - JOUR AU - Coleman, J. J. AU - Rounsley, S. D. AU - Rodriguez-Carres, M. AU - Kuo, A. AU - Wasmann, C. C. PY - 2009 DA - 2009// TI - The genome of Nectria haematococca: Contribution of supernumerary chromosomes to gene expansion JO - PLoS Genetics VL - 5 UR - https://doi.org/10.1371/journal.pgen.1000618 DO - 10.1371/journal.pgen.1000618 ID - Coleman2009 ER - TY - CHAP AU - Collemare, J. AU - Lebrun, M. -. H. ED - Martin, F. ED - Kamoun, S. PY - 2012 DA - 2012// TI - Fungal secondary metabolites: ancient toxins and novel effectors in plant-microbe interactions BT - Effectors in Plant-Microbe Interactions PB - Sons CY - UK ID - Collemare2012 ER - TY - JOUR AU - Conesa, A. AU - Götz, S. AU - García-Gómez, J. M. AU - Teról, J. AU - Talon, M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER - TY - JOUR AU - Croll, D. AU - McDonald, B. A. PY - 2012 DA - 2012// TI - The accessory genome as a cradle for adaptive evolution in pathogens JO - PLoS Pathogens VL - 8 UR - https://doi.org/10.1371/journal.ppat.1002608 DO - 10.1371/journal.ppat.1002608 ID - Croll2012 ER - TY - JOUR AU - Beer, Z. W. AU - Duong, T. A. AU - Barnes, I. AU - Wingfield, B. D. AU - Wingfield, M. J. PY - 2014 DA - 2014// TI - Redefining Ceratocystis and allied genera JO - Studies in Mycology VL - 79 UR - https://doi.org/10.1016/j.simyco.2014.10.001 DO - 10.1016/j.simyco.2014.10.001 ID - Beer2014 ER - TY - CHAP AU - Beer, Z. W. AU - Wingfield, M. J. ED - Seifert, K. A. ED - Beer, Z. W. ED - Wingfield, M. J. PY - 2013 DA - 2013// TI - Emerging lineages in the Ophiostomatales BT - The Ophiostomatoid Fungi: expanding frontiers PB - CBS-KNAW Fungal Biodiversity Centre CY - Utrecht ID - Beer2013 ER - TY - JOUR AU - DiGuistini, S. AU - Wang, Y. AU - Liao, N. Y. AU - Taylor, G. AU - Tanguay, P. PY - 2011 DA - 2011// TI - Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen JO - Proceeding of the National Academy of Sciences, USA VL - 108 UR - https://doi.org/10.1073/pnas.1011289108 DO - 10.1073/pnas.1011289108 ID - DiGuistini2011 ER - TY - JOUR AU - Duong, T. A. AU - Beer, Z. W. AU - Wingfield, B. D. AU - Wingfield, M. J. PY - 2013 DA - 2013// TI - Characterization of the mating-type genes in Leptographium procerum and Leptographium profanum JO - Fungal Biology VL - 117 UR - https://doi.org/10.1016/j.funbio.2013.04.005 DO - 10.1016/j.funbio.2013.04.005 ID - Duong2013 ER - TY - JOUR AU - Fuckel, L. PY - 1870 DA - 1870// TI - [“1869”] Symbolae mycological: Beiträge zur Kenntnis der Rheinischen Pilze JO - Jahrbücher des Nassauischen Vereins für Naturkunde VL - 23 ID - Fuckel1870 ER - TY - JOUR AU - Geiser, D. M. AU - Aoki, T. AU - Bacon, C. W. AU - Baker, S. E. AU - Bhattacharayya, M. B. PY - 2013 DA - 2013// TI - One Fungus, One Name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use JO - Phytopathology VL - 103 UR - https://doi.org/10.1094/PHYTO-07-12-0150-LE DO - 10.1094/PHYTO-07-12-0150-LE ID - Geiser2013 ER - TY - JOUR AU - Gurevich, A. AU - Saveliev, V. AU - Vyahhi, N. AU - Tesler, G. PY - 2013 DA - 2013// TI - QUAST: quality assessment tool for genome assemblies JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt086 DO - 10.1093/bioinformatics/btt086 ID - Gurevich2013 ER - TY - JOUR AU - Hallen, H. E. AU - Luo, H. AU - Scott-Craig, J. S. AU - Walton, J. D. PY - 2007 DA - 2007// TI - Gene family encoding the major toxins of lethal Amanita mushrooms JO - Proceeding of the National Academy of Sciences, USA VL - 104 UR - https://doi.org/10.1073/pnas.0707340104 DO - 10.1073/pnas.0707340104 ID - Hallen2007 ER - TY - JOUR AU - Heath, R. N. AU - Wingfield, M. J. AU - Wyk, M. AU - Roux, J. PY - 2009 DA - 2009// TI - Insect associates of Ceratocystis albifundus and patterns of association in a native savanna ecosystem in South Africa JO - Environmental Entomology VL - 38 UR - https://doi.org/10.1603/022.038.0207 DO - 10.1603/022.038.0207 ID - Heath2009 ER - TY - JOUR AU - Hepting, G. H. AU - Roth, E. R. PY - 1946 DA - 1946// TI - Pitch canker, a new disease of some southern pines JO - Journal of Forestry VL - 44 ID - Hepting1946 ER - TY - JOUR AU - Hess, J. AU - Skrede, I. AU - Wolfe, B. E. AU - LaButti, K. AU - Ohm, R. A. PY - 2014 DA - 2014// TI - Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita fungi JO - Genome Biology and Evolution VL - 6 UR - https://doi.org/10.1093/gbe/evu121 DO - 10.1093/gbe/evu121 ID - Hess2014 ER - TY - JOUR AU - Hinz, U. G. AU - Fivaz, J. AU - Girod, P. A. AU - Zyrd, J. P. PY - 1997 DA - 1997// TI - The gene coding for the DOPA dioxygenase involved in betalain biosynthesis in Amanita muscaria and its regulation JO - Molecular and General Genetics VL - 256 UR - https://doi.org/10.1007/s004380050539 DO - 10.1007/s004380050539 ID - Hinz1997 ER - TY - JOUR AU - Hoff, K. J. AU - Stanke, M. PY - 2013 DA - 2013// TI - WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes JO - Nucleic Acids Research VL - 41 UR - https://doi.org/10.1093/nar/gkt418 DO - 10.1093/nar/gkt418 ID - Hoff2013 ER - TY - JOUR AU - Holst-Jensen, A. AU - Kohn, L. M. AU - Schumacher, T. PY - 1997 DA - 1997// TI - Nuclear rDNA phylogeny of the Sclerotiniaceae JO - Mycologia VL - 89 UR - https://doi.org/10.1080/00275514.1997.12026859 DO - 10.1080/00275514.1997.12026859 ID - Holst-Jensen1997 ER - TY - JOUR AU - Holst-Jensen, A. AU - Vaage, M. AU - Schumacher, T. PY - 1998 DA - 1998// TI - Approximation to the phylogeny of Sclerotinia and related genera JO - Nordic Journal of Botany VL - 18 UR - https://doi.org/10.1111/j.1756-1051.1998.tb01553.x DO - 10.1111/j.1756-1051.1998.tb01553.x ID - Holst-Jensen1998 ER - TY - JOUR AU - Iturritxa, E. AU - Ganley, R. J. AU - Wright, J. AU - Heppe, E. AU - Steenkamp, E. T. PY - 2011 DA - 2011// TI - A genetically homogenous population of Fusarium circinatum causes pitch canker of Pinus radiata in the Basque Country, Spain JO - Fungal Biology VL - 115 UR - https://doi.org/10.1016/j.funbio.2010.12.014 DO - 10.1016/j.funbio.2010.12.014 ID - Iturritxa2011 ER - TY - BOOK AU - Jacobs, K. AU - Wingfield, M. J. PY - 2001 DA - 2001// TI - Leptographium Species: tree pathogens, insect associates, and agents of blue-stain PB - American Phytopathological Society Press CY - St Paul, MN ID - Jacobs2001 ER - TY - JOUR AU - Jacobs, K. AU - Wingfield, M. J. AU - Wingfield, B. D. PY - 2001 DA - 2001// TI - Phylogenetic relationships in Leptographium based on morphological and molecular characters JO - Canadian Journal of Botany VL - 79 ID - Jacobs2001 ER - TY - STD TI - Jeong, H, Lee, S, Choi, GJ, Lee, T, Yun S-H (2013) Draft genome sequence of Fusarium fujikuroi B14, the causal agent of the bakanae disease of rice. Genome Announcements1: e00035-13. ID - ref36 ER - TY - JOUR AU - Johnston, P. J. AU - Park, D. PY - 2013 DA - 2013// TI - The phylogenetic position of Lanzia berggrenii and its sister species JO - Mycostema VL - 32 ID - Johnston2013 ER - TY - JOUR AU - Jurgenson, J. E. AU - Zeller, K. A. AU - Leslie, J. F. PY - 2002 DA - 2002// TI - Expanded genetic map of Gibberella moniliformis (Fusarium verticillioides) JO - Applied and Environmental Microbiology VL - 68 UR - https://doi.org/10.1128/AEM.68.4.1972-1979.2002 DO - 10.1128/AEM.68.4.1972-1979.2002 ID - Jurgenson2002 ER - TY - JOUR AU - Klepzig, K. D. AU - Raffa, K. F. AU - Smalley, E. B. PY - 1991 DA - 1991// TI - Association of an insectfungal complex with red pine decline in Wisconsin JO - Forest Science VL - 37 ID - Klepzig1991 ER - TY - JOUR AU - Kohn, L. M. PY - 1979 DA - 1979// TI - Delimitation of the economically important plant pathogenic Sclerotinia species JO - Phytopathology VL - 69 UR - https://doi.org/10.1094/Phyto-69-881 DO - 10.1094/Phyto-69-881 ID - Kohn1979 ER - TY - JOUR AU - Kvas, M. AU - Marasas, W. F. O. AU - Wingfield, B. D. AU - Wingfield, M. J. AU - Steenkamp, E. T. PY - 2009 DA - 2009// TI - Diversity and evolution of Fusarium species in the Gibberella fujikuroi complex JO - Fungal Diversity VL - 34 ID - Kvas2009 ER - TY - JOUR AU - Lackner, A. L. AU - Alexander, S. A. PY - 1982 DA - 1982// TI - Occurrence and pathogenicity of Verticicladiella procera in Christmas tree plantations in Virginia JO - Plant Disease VL - 66 UR - https://doi.org/10.1094/PD-66-211 DO - 10.1094/PD-66-211 ID - Lackner1982 ER - TY - JOUR AU - Lu, M. AU - Wingfield, M. J. AU - Gillette, N. E. AU - Mori, S. R. AU - Sun, J. H. PY - 2010 DA - 2010// TI - Complex interactions among host pines and fungi vectored by an invasive bark beetle JO - New Phytologist VL - 187 UR - https://doi.org/10.1111/j.1469-8137.2010.03316.x DO - 10.1111/j.1469-8137.2010.03316.x ID - Lu2010 ER - TY - JOUR AU - Lu, M. AU - Wingfield, M. J. AU - Gillette, N. E. AU - Sun, J. H. PY - 2011 DA - 2011// TI - Do novel genotypes drive the success of an invasive bark beetle-fungus complex? Implications for potential reinvasion JO - Ecology VL - 92 UR - https://doi.org/10.1890/11-0687.1 DO - 10.1890/11-0687.1 ID - Lu2011 ER - TY - JOUR AU - Lu, M. AU - Zhou, X. D. AU - Beer, Z. W. AU - Wingfield, M. J. AU - Sun, J. H. PY - 2009 DA - 2009// TI - Ophiostomatoid fungi associated with the invasive pine-infesting bark beetle, Dendroctonus valens, in China JO - Fungal Diversity VL - 38 ID - Lu2009 ER - TY - JOUR AU - Lu, Q. AU - Decock, C. AU - Zhang, X. Y. AU - Maraite, H. PY - 2009 DA - 2009// TI - Ophiostomatoid fungi (Ascomycota) associated with Pinus tabuliformis infested by Dendroctonus valens (Coleoptera) in northern China and an assessment of their pathogenicity on mature trees JO - Antonie Van Leeuwenhoek VL - 96 UR - https://doi.org/10.1007/s10482-009-9343-6 DO - 10.1007/s10482-009-9343-6 ID - Lu2009 ER - TY - JOUR AU - Ma, L. -. J. AU - Does, H. C. AU - Borkovich, K. A. AU - Coleman, J. J. AU - Daboussi, M. -. J. PY - 2010 DA - 2010// TI - Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium JO - Nature VL - 464 UR - https://doi.org/10.1038/nature08850 DO - 10.1038/nature08850 ID - Ma2010 ER - TY - STD TI - Mardanov, AV, Beletsky, AV, Kadnikov, VV, Ignatov, AN, Ravin, NV (2014) Draft genome sequence of Sclerotinia borealis, a psychrophilic plant pathogenic fungus. Genome Announcements2: e01175-13. ID - ref48 ER - TY - JOUR AU - Martin, F. AU - Cullen, D. AU - Hibbett, D. AU - Pisabarro, A. AU - Spatafora, J. W. PY - 2011 DA - 2011// TI - Sequencing the fungal tree of life JO - New Phytologist VL - 190 UR - https://doi.org/10.1111/j.1469-8137.2011.03688.x DO - 10.1111/j.1469-8137.2011.03688.x ID - Martin2011 ER - TY - CHAP AU - Masuya, H. AU - Yamaoka, Y. AU - Wingfield, M. J. ED - Seifert, K. A. ED - Beer, Z. W. ED - Wingfield, M. J. PY - 2013 DA - 2013// TI - Ophiostomatoid fungi and their associations with bark beetles in Japan BT - The Ophiostomatoid Fungi: expanding frontiers PB - CBS-KNAW Fungal Biodiversity Centre CY - Utrecht ID - Masuya2013 ER - TY - JOUR AU - Metzker, M. L. PY - 2009 DA - 2009// TI - Sequencing technologies—the next generation JO - Nature Reviews Genetics VL - 11 UR - https://doi.org/10.1038/nrg2626 DO - 10.1038/nrg2626 ID - Metzker2009 ER - TY - JOUR AU - Möller, E. M. AU - Bahnweg, G. AU - Sandermann, H. AU - Geiger, H. H. PY - 1992 DA - 1992// TI - A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies and infected plant tissues JO - Nucleic Acids Research VL - 20 UR - https://doi.org/10.1093/nar/20.22.6115 DO - 10.1093/nar/20.22.6115 ID - Möller1992 ER - TY - JOUR AU - Moreno-Hagelsieb, G. AU - Latimer, K. PY - 2008 DA - 2008// TI - Choosing BLAST options for better detection of orthologs as reciprocal best hits JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm585 DO - 10.1093/bioinformatics/btm585 ID - Moreno-Hagelsieb2008 ER - TY - JOUR AU - Morris, M. J. AU - Wingfield, M. J. AU - Beer, C. PY - 1993 DA - 1993// TI - Gummosis and wilt of Acacia mearnsii in South Africa caused by Ceratocystis fimbriata JO - Plant Pathology VL - 42 UR - https://doi.org/10.1111/j.1365-3059.1993.tb01570.x DO - 10.1111/j.1365-3059.1993.tb01570.x ID - Morris1993 ER - TY - CHAP AU - Murphy, C. AU - Powlowski, J. AU - Wu, M. AU - Butler, G. AU - Tsang, A. PY - 2011 DA - 2011// TI - Curation of characterized glycoside hydrolases of fungal origin BT - Database ID - Murphy2011 ER - TY - JOUR AU - Ojeda, D. I. AU - Dhillon, B. AU - Tsui, C. K. M. AU - Hamelin, R. C. PY - 2014 DA - 2014// TI - Single-nucleotide polymorphism discovery in Leptographium longiclavatum, a mountain pine beetle-associated symbiotic fungus, using wholegenome resequencing JO - Molecular Ecology Resources VL - 14 UR - https://doi.org/10.1111/1755-0998.12191 DO - 10.1111/1755-0998.12191 ID - Ojeda2014 ER - TY - JOUR AU - Parra, G. AU - Bradnam, K. AU - Korf, I. PY - 2007 DA - 2007// TI - CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm071 DO - 10.1093/bioinformatics/btm071 ID - Parra2007 ER - TY - JOUR AU - Parra, G. AU - Bradnam, K. AU - Ning, Z. AU - Keane, T. AU - Korf, I. PY - 2008 DA - 2008// TI - Assessing the gene space in draft genomes JO - Nucleic Acids Research VL - 37 ID - Parra2008 ER - TY - JOUR AU - Pegler, D. N. PY - 2002 DA - 2002// TI - Useful fungi of the world: Caesar’s mushroom and the Christmas mushroom JO - Mycologist VL - 16 ID - Pegler2002 ER - TY - JOUR AU - Petersen, T. N. AU - Brunak, S. AU - Heijne, G. AU - Nielsen, H. PY - 2011 DA - 2011// TI - SignalP 4.0: discriminating signal peptides from transmembrane regions JO - Nature Methods VL - 8 UR - https://doi.org/10.1038/nmeth.1701 DO - 10.1038/nmeth.1701 ID - Petersen2011 ER - TY - JOUR AU - Reay, S. D. AU - Walsh, P. J. AU - Ram, A. AU - Farrell, R. L. PY - 2002 DA - 2002// TI - The invasion of Pinus radiata seedlings by sapstain fungi, following attack by the Black Pine Bark Beetle, Hylastes ater (Coleoptera: Scolytidae) JO - Forest Ecology and Management VL - 165 UR - https://doi.org/10.1016/S0378-1127(01)00628-4 DO - 10.1016/S0378-1127(01)00628-4 ID - Reay2002 ER - TY - JOUR AU - Roux, J. AU - Dunlop, R. AU - Wingfield, M. J. PY - 1999 DA - 1999// TI - Susceptibility of elite Acacia mearnsii families to Ceratocystis wilt in south Africa JO - Journal of Forest Research VL - 4 UR - https://doi.org/10.1007/BF02762246 DO - 10.1007/BF02762246 ID - Roux1999 ER - TY - JOUR AU - Roux, J. AU - Heath, R. N. AU - Labuschagne, L. AU - Nkuekam, G. K. AU - Wingfield, M. J. PY - 2007 DA - 2007// TI - Occurrence of the wattle wilt pathogen, Ceratocystis albifundus on native South African trees JO - Forest Pathology VL - 37 UR - https://doi.org/10.1111/j.1439-0329.2007.00507.x DO - 10.1111/j.1439-0329.2007.00507.x ID - Roux2007 ER - TY - CHAP AU - Roux, J. AU - Wingfield, M. J. ED - Seifert, K. A. ED - Beer, Z. W. ED - Wingfield, M. J. PY - 2013 DA - 2013// TI - Ceratocystis species on the African continent, with particular reference to C. albifundus, an African species in the C. fmbriata sensu lato species complex BT - Ophiostomatoid Fungi: expanding frontiers PB - CBS-KNAW Fungal Biodiversity Centre CY - Utrecht ID - Roux2013 ER - TY - JOUR AU - Simpson, J. T. AU - Wong, K. AU - Jackman, S. D. AU - Schein, J. E. AU - Jones, S. J. M. PY - 2009 DA - 2009// TI - ABySS: A parallel assembler for short read sequence data JO - Genome Research VL - 19 UR - https://doi.org/10.1101/gr.089532.108 DO - 10.1101/gr.089532.108 ID - Simpson2009 ER - TY - BOOK AU - Smit, A. F. A. AU - Hubley, R. AU - Green, P. PY - 1996 DA - 1996// TI - RepeatMasker Open-3.0 ID - Smit1996 ER - TY - JOUR AU - Stanke, M. AU - Diekhans, M. AU - Baertsch, R. AU - Haussler, D. PY - 2008 DA - 2008// TI - Using native and syntenically mapped cDNA alignments to improve de novo gene finding JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn013 DO - 10.1093/bioinformatics/btn013 ID - Stanke2008 ER - TY - JOUR AU - Stanke, M. AU - Steinkamp, R. AU - Waack, S. AU - Morgenstern, B. PY - 2004 DA - 2004// TI - AUGUSTUS: a web server for gene finding in eukaryotes JO - Nucleic Acids Research VL - 32 UR - https://doi.org/10.1093/nar/gkh379 DO - 10.1093/nar/gkh379 ID - Stanke2004 ER - TY - JOUR AU - Stanke, M. AU - Tzvetkova, A. AU - Morgenstern, B. PY - 2006 DA - 2006// TI - AUGUSTUS at EGASP: using, EST, protein and genomic alignments for improved gene prediction in the human genome JO - Genome Biology VL - 7 UR - https://doi.org/10.1186/gb-2006-7-s1-s11 DO - 10.1186/gb-2006-7-s1-s11 ID - Stanke2006 ER - TY - JOUR AU - Strack, D. AU - Vogt, T. AU - Schliemann, W. PY - 2003 DA - 2003// TI - Recent advances in betalain research JO - Phytochemistry VL - 62 UR - https://doi.org/10.1016/S0031-9422(02)00564-2 DO - 10.1016/S0031-9422(02)00564-2 ID - Strack2003 ER - TY - JOUR AU - Sun, J. H. AU - Lu, M. AU - Gillette, N. E. AU - Wingfield, M. J. PY - 2013 DA - 2013// TI - Red turpentine beetle: innocuous native becomes invasive tree killer in China JO - Annual Reviews of Entomology VL - 58 UR - https://doi.org/10.1146/annurev-ento-120811-153624 DO - 10.1146/annurev-ento-120811-153624 ID - Sun2013 ER - TY - JOUR AU - Taerum, S. J. AU - Duong, T. A. AU - Beer, Z. W. AU - Gillette, N. E. AU - Sun, J. H. PY - 2013 DA - 2013// TI - Large shift in symbiont assemblage in the invasive red turpentine beetle JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0078126 DO - 10.1371/journal.pone.0078126 ID - Taerum2013 ER - TY - JOUR AU - Taylor, A. F. S. AU - Alexander, I. PY - 2005 DA - 2005// TI - The ectomycorrhizal symbiosis: life in the real world JO - Mycologist VL - 19 UR - https://doi.org/10.1017/S0269-915X(05)00303-4 DO - 10.1017/S0269-915X(05)00303-4 ID - Taylor2005 ER - TY - JOUR AU - Nest, M. A. AU - Bihon, W. AU - Vos, L. AU - Naidoo, K. AU - Roodt, D. PY - 2014 DA - 2014// TI - Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis JO - IMA Fungus VL - 5 UR - https://doi.org/10.5598/imafungus.2014.05.01.13 DO - 10.5598/imafungus.2014.05.01.13 ID - Nest2014 ER - TY - JOUR AU - Wyk, M. AU - Al Adawi, A. O. AU - Khan, I. A. AU - Deadman, M. L. AU - Al Jahwari, A. A. PY - 2007 DA - 2007// TI - Ceratocystis manginecans sp. nov., causal agent of a destructive mango wilt disease in Oman and Pakistan JO - Fungal Diversity VL - 27 ID - Wyk2007 ER - TY - JOUR AU - Wyk, M. AU - Roux, J. AU - Barnes, I. AU - Wingfield, B. D. AU - Chhetri, D. B. PY - 2004 DA - 2004// TI - Ceratocystis bhutanensis sp. nov., associated with the bark beetle Ips schmutzenhoferi on Picea spinulosa in Bhutan JO - Studies in Mycology VL - 50 ID - Wyk2004 ER - TY - JOUR AU - Vetter, J. PY - 1998 DA - 1998// TI - Toxins of Amanita phalloides JO - Toxicon VL - 36 UR - https://doi.org/10.1016/S0041-0101(97)00074-3 DO - 10.1016/S0041-0101(97)00074-3 ID - Vetter1998 ER - TY - JOUR AU - Whetzel, H. H. PY - 1945 DA - 1945// TI - A synopsis of the genera and species of the Sclerotiniaceae, a family of stromatic inoperculate discomycetes JO - Mycologia VL - 37 UR - https://doi.org/10.1080/00275514.1945.12024025 DO - 10.1080/00275514.1945.12024025 ID - Whetzel1945 ER - TY - JOUR AU - Wiemann, P. AU - Sieber, C. M. K. AU - Bargen, K. W. AU - Studt, L. AU - Niehaus, E. -. M. PY - 2013 DA - 2013// TI - Deciphering the cryptic genome: Genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites JO - PLoS Pathogens VL - 9 UR - https://doi.org/10.1371/journal.ppat.1003475 DO - 10.1371/journal.ppat.1003475 ID - Wiemann2013 ER - TY - JOUR AU - Wilken, P. M. AU - Steenkamp, E. T. AU - Wingfield, M. J. AU - Beer, Z. W. AU - Wingfield, B. D. PY - 2013 DA - 2013// TI - Draft nuclear genome sequence for the plant pathogen, Ceratocystis fmbriata JO - IMA Fungus VL - 4 UR - https://doi.org/10.5598/imafungus.2013.04.02.14 DO - 10.5598/imafungus.2013.04.02.14 ID - Wilken2013 ER - TY - JOUR AU - Wingfield, B. D. AU - Steenkamp, E. T. AU - Santana, Q. C. AU - Coetzee, M. P. A. AU - Bam, S. PY - 2012 DA - 2012// TI - First fungal genome sequence from Africa: A preliminary analysis JO - South African Journal of Science VL - 108 ID - Wingfield2012 ER - TY - CHAP AU - Wingfield, B. D. AU - Wyk, M. AU - Roos, H. AU - Wingfield, M. J. ED - Seifert, K. A. ED - Beer, Z. W. ED - Wingfield, M. J. PY - 2013 DA - 2013// TI - Ceratocystis: emerging evidence for discrete generic boundaries BT - Ophiostomatoid Fungi: expanding frontiers PB - CBS-KNAW Fungal Biodiversity Centre CY - Utrecht ID - Wingfield2013 ER - TY - JOUR AU - Wingfield, M. J. AU - Beer, C. AU - Visser, C. AU - Wingfield, B. D. PY - 1996 DA - 1996// TI - A new Ceratocystis species defined using morphological and ribosomal DNA sequence comparisons JO - Systematic and Applied Microbiology VL - 19 UR - https://doi.org/10.1016/S0723-2020(96)80045-2 DO - 10.1016/S0723-2020(96)80045-2 ID - Wingfield1996 ER - TY - CHAP AU - Wingfield, M. J. AU - Capretti, P. AU - MacKenzie, M. ED - Harrington, T. C. ED - Cobb, F. W. PY - 1988 DA - 1988// TI - Leptographium spp. as root pathogens of conifers. An international perspective BT - Leptographium root diseases on conifers PB - American Phytopathological Society Press CY - St Paul, MN ID - Wingfield1988 ER - TY - CHAP AU - Wingfield, M. J. AU - Roux, J. AU - Wingfield, B. D. AU - Slippers, B. ED - Seifert, K. A. ED - Beer, Z. W. ED - Wingfield, M. J. PY - 2013 DA - 2013// TI - Ceratocystis and Ophiostoma: international spread, new associations and plant health BT - Ophiostomatoid Fungi: expanding frontiers PB - CBS-KNAW Fungal Biodiversity Centre CY - Utrecht ID - Wingfield2013 ER - TY - JOUR AU - Wolfe, B. E. AU - Tulloss, R. E. AU - Pringle, A. PY - 2012 DA - 2012// TI - The irreversible loss of a decomposition pathway marks the single origin of an ectomycorrhizal symbiosis JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0039597 DO - 10.1371/journal.pone.0039597 ID - Wolfe2012 ER - TY - JOUR AU - Xu, J. -. R. AU - Yan, K. AU - Dickman, M. B. AU - Leslie, J. F. PY - 1995 DA - 1995// TI - Electrophoretic karyotypes distinguish the biological species of Gibberella fujikuroi (Fusarium section Liseola) JO - Molecular Plant-Microbe Interactions VL - 8 UR - https://doi.org/10.1094/MPMI-8-0074 DO - 10.1094/MPMI-8-0074 ID - Xu1995 ER - TY - CHAP AU - Yin, M. AU - Duong, T. A. AU - Wingfield, M. J. AU - Zhou, X. D. AU - Beer, Z. W. PY - 2015 DA - 2015// TI - Taxonomy and phylogeny of the Leptographium procerum complex, including L. sinense sp. nov. and L. longiconidiophorum sp. nov. BT - Antonie van Leeuwenhoek ID - Yin2015 ER - TY - JOUR AU - Yin, Y. AU - Mao, X. AU - Yang, J. C. AU - Chen, X. AU - Mao, F. PY - 2012 DA - 2012// TI - dbCAN: a web resource for automated carbohydrate-active enzyme annotation JO - Nucleic Acids Research VL - 40 UR - https://doi.org/10.1093/nar/gks479 DO - 10.1093/nar/gks479 ID - Yin2012 ER - TY - JOUR AU - Zerbino, D. R. AU - Birney, E. PY - 2008 DA - 2008// TI - Velvet: algorithms for de novo short read assembly using de Bruijn graphs JO - Genome Research VL - 18 UR - https://doi.org/10.1101/gr.074492.107 DO - 10.1101/gr.074492.107 ID - Zerbino2008 ER - TY - JOUR AU - Zhao, Z. AU - Liu, H. AU - Wang, C. AU - Xu, J. -. R. PY - 2013 DA - 2013// TI - Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-274 DO - 10.1186/1471-2164-14-274 ID - Zhao2013 ER - TY - JOUR AU - Zolan, M. E. AU - Pukkila, P. J. PY - 1986 DA - 1986// TI - Inheritance of DNA methylation in Coprinus cinereus JO - Molecular and Cellular Biology VL - 6 UR - https://doi.org/10.1128/MCB.6.1.195 DO - 10.1128/MCB.6.1.195 ID - Zolan1986 ER -