Table 1 Summary of whole genome DNA sequence assemblies generated in the current study, Rutstroemia sydowiana CBS 115975 and Sclerotinia echinophila CBS 11548, and previously published genome sequences from the family Sclerotineaceae. The genomes of R. sydowiana CBS 115975, S. echinophila CBS 11548, and S. borealis F-4157 were generated using next generation sequencing technology; S. sclerotiorum 1980 and B. cinerea T4 genomes were produced from a Sanger sequencing approach. Not all summary data were available for S. borealis F-4157.

Summary data

Coverage

121

101

23

9.1

10

CEGMA

97.20%

93.60%

99.20%

100.00%

98.40%

Total sequence length (Mb)

51.9

40.3

39.5

38.3

39.5

Number of scaffolds

11591

7348

1241

36

118

Scaffold N50

14947

9536

130819

1630000

562000

Number of contigs

14655

12842

1741

679

2281

Contig N50

8570

4918

79787

122550

35000

GC (%)

43.1

43.1

42

41.8

42.4

Predicted gene models

17350

12555

10171

14503

10391

Predicted secreted proteins

1120

880

-

879

630

Predicted CAZYmes

Total CAZYmes

789

641

-

578

657

Pectate lyases

10

4

-

6

11

Glycosyltransferases

122

100

-

92

105

Glycoside hydrolases

316

248

-

227

245

Carbohydrate esterases

133

120

-

99

130

Carbohydrate binding motifs

66

64

-

62

71

Predicted Secondary Metabolite (SM) Clusters

Total SM clusters

74

58

-

35

50

Type I polyketide synthetases (PKSs)

27

20

-

15

14

Type III PKSs

2

2

-

1

1

Nonribosomal peptide synthetases (NRPSs)

10

7

-

7

12

Terpene clusters

14

6

-

4

8

Hglks

2

4

-

0

0