Table 1 List of known and putative meiosis genes in the genome of Saccharomyces cerevisiae, Cryptococcus neoformans and Basidioascus undulatus. Meiosis specific proteins are highlighted in red.
From: Basidioascus undulatus: genome, origins, and sexuality
Process | Gene name | Saccharomyces cerevisiae a | Cryptococcus neoformans b | Basidioascus undulatus vs. Saccharomyces cerevisiae | Basidioascus undulatus vs. Cryptococcus neoformans | Basidioascus undulatus | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Locus ID | Locus ID | Score | E-value | % identity | % positive | Locus ID | Score | E-value | % identity | % positive | Probable Locus ID | |
DSB generation | SP011 | YHL022C | XM_767420.1 | 102794F55C | 72.8 | 0.0 | 25.46 | 43.54 | 102794F55C | 191 | 0.0 | 32.92 | 51.49 | 102794F55C |
| Â | REC107/MEI2 | YJR021C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | MEI4 | YER044C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | REC102 | YLR329W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | REC104 | YHR157W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | REC114 | YMR133W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | SKI8 | YGL213C | XP_567964.1 | Not detected | Â | Â | Â | Â | A5C17B7D33 | 79.3 | 0.0 | 40 | 54.29 | A5C17B7D33 |
| Â | MER1 | YNL210W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | HFM1/MER3 | YGL251C | XP_774045.1 | 268E1B92EF | 286 | 0.0 | 30.69 | 50.14 | 268E1B92EF | 285 | 0.0 | 29.55 | 48.66 | 268E1B92EF |
| Â | NAM8/MRE2 | YHR086W | XP_568215.1 | 012CC612A1 | 88.6 | 0.0 | 27.24 | 46.24 | C3284824DB | 211 | 0.0 | 75.57 | 83.21 | Conflict |
Removal of Spo11 | MRE11 | YMR224C | XP_571170.1 | 550A163039 | 365 | 0.0 | 40.59 | 58.02 | 550A163039 | 629 | 0 | 56.55 | 74.34 | 550A163039 |
RAD50 | YNL250W | XP_771929.1 | 1CAAD52FF0 | 543 | 0.0 | 30.88 | 52.16 | 1CAAD52FF0 | 869 | 0 | 38.91 | 61.16 | 1CAAD52FF0 | |
| Â | XRS2/NBS1 | YDR369C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | SAE2/COM1 | YGL175C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
Strand invasion | RAD51 | YER095W | XP_567016.1 | D36F2DAE01 | 481 | 0.0 | 69.28 | 85.58 | D36F2DAE01 | 533 | 0 | 77.71 | 84.46 | D36F2DAE01 |
| Â | DMC1 | YER179W | XP_772121.1 | 1B6A6FD704 | 376 | 0.0 | 58.13 | 75.94 | 1B6A6FD704 | 388 | 0.0 | 67.13 | 80.28 | 1B6A6FD704 |
| Â | RAD52 | YML032C | XP_569087.1 | EA2B481C23 | 186 | 0.0 | 51.9 | 74.05 | EA2B481C23 | 237 | 0.0 | 60.57 | 78.29 | EA2B481C23 |
| Â | RAD54 | YGL163C | XP_570462.1 | 4E6C655AE5 | 525 | 0.0 | 61.26 | 78.21 | 4E6C655AE5 | 599 | 0 | 71.22 | 82.93 | 4E6C655AE5 |
| Â | RDH54 | YBR073W | Absent | ED83E37023 | 476 | 0.0 | 42.43 | 60.41 | NA | Â | Â | Â | Â | ED83E37023 |
| Â | RFA1 | YAR007C | XP_775959.1 | 1512E55FF2 | 350 | 0.0 | 41.02 | 62.08 | 1512E55FF2 | 489 | 0.0 | 51.93 | 70.39 | 1512E55FF2 |
| Â | RFA2 | YNL312W | XP_776149.1 | C06D199EC7 | 95.9 | 0.0 | 37.78 | 55.56 | C06D199EC7 | 174 | 0.0 | 40.51 | 61.18 | C06D199EC7 |
| Â | RFA3 | YJL173C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | SAE3 | YHR079C-A | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | RAD55 | YDR076W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
DNA damage checkpoint | PCH2 | YBR186W | XP_567632.1 | 1586D154C9 | 177 | 0.0 | 36.88 | 53.49 | 1586D154C9 | 418 | 0.0 | 47.79 | 66.81 | 1586D154C9 |
MEC1 | YBR136W | XP_568889.1 | E568B50733 | 483 | 0.0 | 24.05 | 43.61 | 87D911C03D | 713 | 0 | 61.72 | 76.24 | Conflict | |
| Â | RAD17 | YOR368W | XP_569244.1 | Not detected | Â | Â | Â | Â | D5120AB0E3 | 171 | 0.0 | 34.76 | 48.66 | D5120AB0E3 |
| Â | RAD24 | YER173W | Absent | D5120AB0E3 | 54.3 | 0.000 | 27.48 | 43.51 | NA | Â | Â | Â | Â | D5120AB0E3 |
| Â | DDC1 | YPL194W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
Regulation of crossover frequency | MLH1 | YMR167W | XP_571158.1 | F0BB260AD1 | 361 | 0.0 | 53.03 | 70.03 | F0BB260AD1 | 642 | 0 | 51.99 | 66.51 | F0BB260AD1 |
MLH3 | YPL164C | XP_570272.1 | BC2D40152B | 115 | 0.0 | 23.47 | 44.13 | BC2D40152B | 178 | 0.0 | 37.67 | 57.88 | BC2D40152B | |
MSH4 | YFL003C | XP_773414.1 | CAE76A5567 | 347 | 0.0 | 31.07 | 50.64 | CAE76A5567 | 546 | 0 | 39.76 | 59.04 | CAE76A5567 | |
| Â | MSH5 | YDL154W | XP_566842.1 | A5F9B81D55 | 304 | 0.0 | 30.46 | 52.12 | A5F9B81D55 | 436 | 0.0 | 39.91 | 58.36 | A5F9B81D55 |
| Â | SGS1 | YMR190C | XP_776787.1 | FAB5DF8B5F | 526 | 0.0 | 45.14 | 64.24 | FAB5DF8B5F | 597 | 0 | 43.47 | 60.52 | FAB5DF8B5F |
| Â | MEI5 | YPL121C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | MUM2 | YBR057C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | NDJ1 | YOL104C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | RAD1 | YPL022W | XP_772313.1 | 29F5BE17B9 | 258 | 0.0 | 33.14 | 50.95 | 29F5BE17B9 | 374 | 0.0 | 40.1 | 56.48 | 29F5BE17B9 |
| Â | Rad2 | YGR258C | XP_566738.1 | 41955FBDBD | 248 | 0.0 | 44.04 | 67.51 | 41955FBDBD | 355 | 0.0 | 54.75 | 70.82 | 41955FBDBD |
Synaptonemal complex | HOP1 | YIL072W | 50255507 | D659917BB2 | 141 | 0.0 | 31.54 | 56.54 | D659917BB2 | 170 | 0.0 | 34.16 | 50 | D659917BB2 |
HOP2 | YGL033W | 50255433 | Not detected | Â | Â | Â | Â | Not detected | Â | Â | Â | Â | Absent or not detected | |
| Â | MND1 | YGL183C | XP_772550.1 | 5756414F12 | 62 | 0.0 | 20.94 | 43.59 | 5756414F12 | 115 | 0.0 | 37.13 | 51.05 | 5756414F12 |
| Â | ZIP1 | YDR285W | Absent | 2C075CC8D6 | 204 | 0.0 | 79.7 | 86.47 | NA | Â | Â | Â | Â | 2C075CC8D6 |
| Â | ZIP2 | YGL249W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | ZIP3 | YLR394W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | Zip4/Spo22 | YIL073C | 134115038 | Not detected | Â | Â | Â | Â | Not detected | Â | Â | Â | Â | Absent or not detected |
DNA Repair | HTA1 | YDR225W | XP_567962.1 | 2C075CC8D6 | 204 | 0.0 | 79.7 | 86.47 | 2C075CC8D6 | 130 | 0.0 | 57.98 | 73.11 | 2C075CC8D6 |
| Â | HTA2 | YBL003C | XP_569065.1 | 2C075CC8D6 | 206 | 0.0 | 80.45 | 87.22 | F84A4F188E | 205 | 0.0 | 79.39 | 87.79 | Conflict |
| Â | RED1 | YLR263W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | SMC5 | YOL034W | XP_570071.1 | 8388BCCBA3 | 362 | 0.0 | 27.24 | 48.17 | 8388BCCBA3 | 529 | 0.0 | 32.52 | 51.9 | 8388BCCBA3 |
| Â | SMC6 | YLR383W | XP_775824.1 | 13E0CFCD07 | 340 | 0.0 | 27.58 | 47.32 | 13E0CFCD07 | 476 | 0.0 | 29.98 | 50.65 | 13E0CFCD07 |
| Â | EX01 | YOR033C | XP_777034.1 | 36DFC1EC56 | 276 | 0.0 | 43.67 | 65.33 | 36DFC1EC56 | 389 | 0.0 | 54.49 | 71.07 | 36DFC1EC56 |
| Â | HRR25 | YPL204W | XP_570121.1 | 22D0CDA5D9 | 464 | 0.0 | 65.33 | 83.28 | 22D0CDA5D9 | 594 | 0 | 95.22 | 98.63 | 22D0CDA5D9 |
| Â | RAD23 | YEL037C | XP_777611.1 | 0FBB054DC3 | 54.7 | 0.000 | 40.54 | 60.81 | 0FBB054DC3 | 91.3 | 0.0 | 60.81 | 78.38 | 0FBB054DC3 |
Mismatch repair | MSH2 | YOL090W | XP_567098.1 | E449052477 | 746 | 0 | 43.93 | 63.77 | E449052477 | 1087 | 0 | 58.26 | 73.21 | E449052477 |
| Â | MSH3 | YCR092C | XP_569494.1 | 7F6ED5B406 | 354 | 0.0 | 29.13 | 49.57 | 7F6ED5B406 | 790 | 0 | 45.31 | 65.61 | 7F6ED5B406 |
| Â | MSH6 | YDR097C | XP_772722.1 | 122F99619E | 672 | 0 | 36.44 | 56.87 | 122F99619E | 1026 | 0 | 51.24 | 66.83 | 122F99619E |
| Â | MLH2 | YLR035C | Absent | 8C03A290CE | 86.7 | 0.0 | 31.93 | 53.61 | NA | Â | Â | Â | Â | 8C03A290CE |
| Â | PMS1 | YNL082W | 57225775 | 8C03A290CE | 176 | 0.0 | 48.65 | 67.03 | 8C03A290CE | 236 | 0.0 | 60.51 | 75.38 | 8C03A290CE |
Resolution of recombination intermediates | MMS4 | YBR098W | 58260752 | Not detected | Â | Â | Â | Â | Not detected | Â | Â | Â | Â | Not detected or absent |
MUS81 | YDR386W | XP_777360.1 | E55E7AB0BD | 84 | 0.0 | 30.49 | 49.78 | E55E7AB0BD | 101 | 0.0 | 32.39 | 50.7 | E55E7AB0BD | |
SLX1 | YBR228W | XP_567159.1 | A74C037F01 | 83.2 | 0.0 | 52.44 | 68.29 | A74C037F01 | 108 | 0.0 | 61.54 | 74.36 | A74C037F01 | |
| Â | TOP1 | YOL006C | XP_572925.1 | DB366D3081 | 439 | 0.0 | 49.78 | 66.89 | DB366D3081 | 518 | 0.0 | 56.71 | 70.56 | DB366D3081 |
| Â | TOP2 | YNL088W | XP_566700.1 | 4AE1080675 | 1197 | 0 | 52.97 | 71.47 | 4AE1080675 | 1491 | 0 | 66.48 | 79.24 | 4AE1080675 |
| Â | TOP3 | YLR234W | XP_773035.1 | BCF17A4E2A | 266 | 0.0 | 43.67 | 60.54 | BCF17A4E2A | 518 | 0.0 | 57.95 | 70.91 | BCF17A4E2A |
| Â | SLX4 | YLR135W | Absent | Not detected | Â | Â | Â | Â | Â | Â | Â | Â | Â | Not detected or absent |
| Â | SLX5 | YDL013W | Absent | Not detected | Â | Â | Â | Â | Â | Â | Â | Â | Â | Not detected or absent |
| Â | SLX8 | YER116C | Absent | 52369A1C42 | 52.4 | 0.000 | 35.9 | 48.72 | Â | Â | Â | Â | Â | 52369A1C42 |
Nonhomologous end joining | YKU70 | YMR284W | XP_573016.1 | AD4E738F04 | 115 | 0.0 | 24.21 | 42.14 | AD4E738F04 | 228 | 0.0 | 32.28 | 47.76 | AD4E738F04 |
YKU80 | YMR106C | XP_568810.1 | 1FC448F440 | 60.8 | 0.000 | 30.29 | 48.57 | 1FC448F440 | 241 | 0.0 | 28.83 | 46.23 | 1FC448F440 | |
| Â | DNL4 | YOR005C | XP_572602.1 | 9206958189 | 223 | 0.0 | 27.5 | 43.38 | E8D29BB570 | 902 | 0 | 71.5 | 83.49 | Conflict |
| Â | LIF1 | YGL090W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
Other | MSC1 | YML128C | XP_570348.1 | 6453C9DC91 | 53.1 | 0.000 | 22.02 | 45.83 | 6453C9DC91 | 168 | 0.0 | 34.33 | 51.12 | 6453C9DC91 |
| Â | MSC7 | YHR039C | XP_773481.1 | AE68F812D8 | 179 | 0.0 | 26.57 | 46.65 | AE68F812D8 | 185 | 0.0 | 28.6 | 45.59 | AE68F812D8 |
| Â | MSC3 | YLR219W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | MSC6 | YOR354C | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | SRS2 | YJL092W | Absent | C8820A864B | 273 | 0.0 | 28.95 | 44.65 | NA | Â | Â | Â | Â | C8820A864B |
| Â | MPS3 | YJL019W | Absent | Not detected | Â | Â | Â | Â | NA | Â | Â | Â | Â | Absent or not detected |
| Â | REC8 | YPR007C | 134090540 | Not detected | Â | Â | Â | Â | 130D4D9937 | 65.1 | 0.0 | 38.04 | 59.78 | 130D4D9937 |
| Â | Mcd1/Rad21 | 6320201b | 58266400 | 130D4D9937 | 68.6 | 0.0 | 35.05 | 57.73 | 130D4D9937 | 142 | 0.0 | 32.61 | 46.65 | 130D4D9937 |
| Â | SMC1 | BAA09230.1b | XP_568851.1 | 82DC381A41 | 534 | 0.0 | 31.89 | 54.54 | 82DC381A41 | 894 | 0 | 44.85 | 64.74 | 82DC381A41 |
| Â | SMC2 | P38989.1b | XP_572171.1 | 68E0241B20 | 516 | 0.0 | 42.44 | 63.29 | 68E0241B20 | 720 | 0 | 58.48 | 70.98 | 68E0241B20 |
| Â | SMC3 | CAA74655.1b | XP_570201.1 | 10D8B5FBE4 | 248 | 0.0 | 41.53 | 60.17 | 10D8B5FBE4 | 404 | 0.0 | 57.95 | 72.56 | 10D8B5FBE4 |
| Â | SMC4* | EDV09389.1b | XP_571168.1 | C71F05C621 | 895 | 0 | 41.41 | 60.31 | C71F05C621 | 1367 | 0 | 56.6 | 73.61 | C71F05C621 |
| Â | SCC3 | P40541.1b | XP_567136.1 | Not detected | Â | Â | Â | Â | Not detected | Â | Â | Â | Â | Absent or not detected |
| Â | PDS5 | Q04264.1b | XP_567466.1 | 062A151CC3 | 326 | 0.0 | 24.85 | 45.12 | 062A151CC3 | 681 | 0 | 35.27 | 55.63 | 062A151CC3 |