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Table 3 Genome assembly and annotation statistics of Basidioascus undulatus compared to Wallemia sebi and W. Ichthyophaga.

From: Basidioascus undulatus: genome, origins, and sexuality

 

Descriptive statistic

B. undulatus

W. sebi

W. icthyophaga

Genome assembly

    
 

Sequencing platform

Illumina Hi-Seq

Illumina Hi-Seq &454

Illumina Hi-Seq

 

Total number of reads

12 Milliona

—

—

 

Read length after trimming

93 bp

—

—

 

Data size

1.1 Gb

 

3.7 Gb

 

Assembly size

32 Mbc

9 8 Mb

9.6 Mb

 

Estimated Percent GC

58%c

40%

45%

 

Nucleotide coverage

24Xb

71X

>270X

 

Number ofcontigs

3058

114

95

 

Number of scaffolds

2992

56

82

 

Longest scaffold size

97 Kbc

900 Kb

790 Kb

 

N50

15 Kbc

340 Kb

440 Kb

Genome annotation

    
 

Percent core eukaryotic genes detected

88%d

—

—

 

All predicted gene models

13935e

5284

4863

 

Evidence supported gene models

6123e

—

—

 

Evidence supported complete gene models

3681

—

—

  1. Statistics were found by the following programs: (a) FastQC, (b) qualimap, (c) QUAST, (d) CEGMA, and (e) MAKER.