Table 1 Summary of the draft genome sequence of Limonomyces culmigenus (CBS 661.85) and published genome sequences for three basidiomycete fungi (Stajich et al. 2010, Floudas et al. 2012, Wibberg et al. 2013).
Species | Limonomyces culmigenus CBS 661.85 | Rhizoctonia solani AG-1 1B | Tremella mesenterica Fries v1.0 | Coprinopsis cinerea 7#130 |
|---|---|---|---|---|
Summary Data | Â | Â | Â | Â |
Total sequence length (Mb) | 36.1 | 47.7 | 28.6 | 37.5 |
Number of scaffolds | 8889 | 1600 | 45 | 13 |
GC (%) | 57.8 | 48.1 | 45.7 | 51.7 |
Predicted gene models | 16394 | 15157 | 8313 | 13393 |
Predicted secreted proteins | 1027 | 876 | 213 | 776 |
Predicted CAZymes | Â | Â | Â | Â |
Total CAZymes | 809 | 944 | 282 | 661 |
Auxiliary activity | 86 | 132 | 95 | 105 |
Carbohydrate binding | 125 | 130 | 12 | 122 |
Carbohydrate esterase | 128 | 141 | 9 | 115 |
Glycoside hydrolase | 355 | 348 | 78 | 212 |
Glycosyltransferase | 106 | 101 | 84 | 89 |
Pectate lyase | 9 | 92 | 4 | 18 |
Predicted Secondary Metabolite Clusters | Â | Â | Â | |
Total SM Clusters | 23 | 13 | 4 | 14 |
Type I polyketide synthetases (PKSs) | 3 | 0 | 0 | 1 |
Type III PKSs | 2 | 0 | 0 | 0 |
Nonribosomal peptide synthetases | 1 | 2 | 0 | 1 |
Terpene clusters | 8 | 8 | 3 | 9 |
Hglks | 0 | 0 | 0 | 0 |