Whole genome comparisons of (A) Fusarium verticillioides to F. temperatum, and (B) F. fujikuroi to F. temperatum. Dotplot alignments of F. verticillioides scaffolds (placed into chromosomes; de Vos et al. 2014) and F. fujikuroi chromosomes (Wiemann et al. 2013) against the 16 largest F. temperatum scaffolds. Forward matches are indicated by red dots, reverse matches with blue dots. The black circles show the reciprocal translocation between chromosome 8 and 11 — the single scaffold representing chromosome 11 has a portion that aligns to chromosome 8 and a portion that align to chromosome 11 of F. verticillioides and F. fujikuroi. Solid arrows are indicative of inversions in F. temperatum, while the dotted arrow indicates an inversion in F. fujikuroi, when compared to the two other Fusarium spp.