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Table 2 Summary of whole nuclear genome DNA sequence assembly statistics (Wilken et al. 2013, van der Nest et al. 2014a, b, Belbahri 2015, Wingfield et al. 2015).

From: Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum

Species Ceratocystis fimbriata Huntiella moniliformis Ceratocystis manginecans Ceratocystis albifundus Huntiella omanensis Thielaviopsis punctulata Ceratocystis platani Thielaviopsis musarum Ceratocystis eucalypticola Davidsoniella virescens
Summary Data           
Accession Numbers APWK00000000 JMSH00000000 JJRZ00000000 JSSU00000000 JSUI00000000 LAEV00000000 LBBL00000000 LKBB00000000 LJOA01000000 LJZU00000000
Genome size (bases) 29 410 862 25 429 610 31 706 104 27 149 029 31 502 652 28 117 660 29 181 400 28 493 324 31 260 284 33 645 160
Genome Coverage 20x 38x 22x 24x 9x 75x 655x 95x 80x 82x
N50 contig size (bases) 42 879 191 280 77 070 58 335 41 324 18915 77 580 103 017 116 489 118 189
GC content (%) 48.065 48 47.9 48.6 47.6 48.3 48.2 49.17 47.9 44.50
Genome completeness (%) 96.771 96.41 96.41 96.41 90.83 (completed genes)1 95.97 (partial genes)1 98.381 972 962 972 972
Assembly software Newbler AbySS Velvet Velvet Velvet SPAdes CLC Genomics Velvet CLC Genomics CLC Genomics
Number of Contigs 3688 680 2234 1958 8127 3751 1213 672 2129 1500
Retained contigs 2641a 365a 980a 939b 1638b 2379b 1213b 541b 961b 561b
ORFs 7266 6832 7494 6967 8359 5480 5963 6963 7353 6953
Gene density (ORFs/Mb) 246 269 236 257 266 195 204 244 235 207
  1. 1 CEGMA completeness score (Parra et al. 2007).
  2. 2 BUSCO completeness score.
  3. a = contigs greater than 500 nucleotides.
  4. b = contigs greater than 1000 nucleotide.