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Table 1 GenBank accession numbers and details of strains used in this study.

From: New endophytic Toxicocladosporium species from cacti in Brazil, and description of Neocladosporium gen. nov.

Species

Strain/isolate number 1

Substrate/host (country)

 

GenBank accession numbers 2

 
   

ITS

LSU

actA

rpb2

tub2

Acrodontium crateriforme

CBS 144.33T (ex-type of Chloridium crateriforme)

Tuberculina maxima (The Netherlands)

FN666565

KX286952

 

KX288399

 

A. luzulae

CBS 841.71T

On leaf of Carex sp. (The Netherlands)

KX287273

KX286961

 

KX288410

 

Cercospora beticola

CBS 116456

On Beta vulgaris (Italy)

DQ678091

DQ678091

 

KT216555

 

C. capsici

CBS 118712

Unknown host, on calyx attached to fruit (Fiji)

GU214653

KF251800

 

KT216554

 

Cladosporium allicinum

CBS 121624ET = CPC 12211

On Hordeum vulgare (Belgium)

EF679350

KJ564335

   

C. chalastosporoides

CBS 125985ET = CPC 13864

On Protea arborea (South Africa)

HM148001

KJ564332

 

LT799751

 

C. fusiforme

CBS 119414T

Hypersaline water of Secovlje salterns (Slovenia)

DQ780388

KJ564333

   

C. herbarum

CBS 121621ET = CPC 12177

On Hordeum vulgare (The Netherlands)

EF679363

KJ564331

 

LT799752

 

C. hillianum

CBS 125988T = CPC 15459

On Typha orientalis (New Zealand)

HM148097

KJ564334

   

C. iridis

CBS 138.40ET (ex-epitype of Scolicotrichum iridis)

On Iris sp. (The Netherlands)

EF679370

EU167591

 

KT223022

 

Dissoconium aciculare

CBS 204.89

On Astragalus sp. (Germany)

AY725520

GU214419

 

KX288435

 

D. aciculare

CBS 342.82T

On Medicago lupulina (Germany)

NR_119427

EU019266

   

D. eucalypti

CBS 132084 = CPC 18969

On Malus domestica fruit (USA)

JQ622084

JQ622092

   

D. proteae

CBS 122900T = CPC 13853

On leaves of Protea sp. (Spain)

EU707897

EU707897

   

Extremus adstrictus

CBS 118292T = TRN96 (ex-type of Devriesia adstricta)

Rock sample (Spain)

NR_144954

KF310022

   

E. antarcticus

CBS 136103T = CCFEE 451 (ex-type of Devriesia antarctica)

Rock sample (Antarctica)

NR_138389

GU250360

   
 

CBS 136104 = CCFEE 5207

Rock sample (Antarctica)

KF309980

KF310021

   

Graphiopsis chlorocephala

CBS 121522 = CPC 11383

On leaves of Paeonia delavayi (Germany)

EU009457

EU009457

 

LT799753

 
 

CBS 100405

On leaf and stem lesions on Paeonia sp. (New Zealand)

EU009456

EU009456

 

KT216520

 

Mycodiella eucalypti

CBS 142098 = CPC 29458

On leaves of Eucalyptus diversicolor (Australia)

KY173420

KY173511

 

KY173586

 

M. laricis-leptolepidis

MAFF 410081

On Larix leptolepis (Japan)

JX901767

JX901862

   

M. sumatrensis

CBS 118499T = CPC 11171 (ex-type of Mycosphaerella sumatrensis)

On Eucalyptus sp. (Indonesia)

KF901655

KF901994

 

LT799754

 

Neocladosporium leucadendri gen. sp. nov.

CBS 131317T = CPC 18315 (ex-type of Toxicocladosporium leucadendri)

On leaves of Leucadendron sp. (South Africa)

JQ044436

JQ044455

LT821376

LT799755

KY706602

 

CPC 29090

On leaves of Kunzea pauciflora (Australia)

LT799737

LT799744

 

LT799756

 
 

CPC 29092

On leaves of Hakea marginata (Australia)

LT799738

LT799745

 

LT799757

 
 

CPC 29166

On leaves of Hakea sp. (Australia)

LT799739

LT799746

 

LT799758

 
 

CPC 29237

On leaves of Banksia media (Australia)

LT799740

LT799747

 

LT799759

 
 

CPC 29545

On leaves of Petrophile sp. (Australia)

LT799741

LT799748

 

LT799760

 

Neodevriesia hilliana

CBS 123187T = CPC 15382 (ex-type of Devriesia hilliana)

On leaves of Macrozamia communis (New Zealand)

NR_145098

GU214414

 

LT799761

 

Neodevriesia sp.

CBS 118302 = TRN142

Rock sample (Spain)

AY559374

GU323975

   

N. xanthorrhoeae

CBS 128219T = CPC 17720 (ex-type of Devriesia zantheria)

On leaves of Xanthorrhoea australis (Australia)

NR_144962

HQ599606

   

Parastagonospora nodorum

CBS 110109

On Lolium perenne (Denmark)

KF251177

EU754175

   

Pseudocercospora eucalyptorum

CBS 132034 = CPC 13455

On Eucalyptus sp. (Portugal)

KF901690

KF902035

 

LT799762

 

P. robusta

CBS 111175T = CPC 1269

On Eucalyptus robur (Malaysia)

KF901678

KF902020

 

KX348075

 

P. schizolobii

CBS 120029T = CPC 12962 (ex-type of Passalora schizolobii)

On Schizolobium parahybum (Ecuador)

KF251322

KF251826

   

Rachicladosporium cboliae

CBS 125424T = CPC 14034

On twig debris (USA)

GU214650

GU214484

 

LT799763

 

R. luculiae

CBS 121620T = CPC 11407

On leaf of Luculia sp. (New Zealand)

EU040237

EU040237

   

R. pini

CBS 129525T = CPC 16770

On needles of Pinus monophylla (The Netherlands)

JF951145

JF951165

 

LT799764

 

Ramichloridium apiculatum

CBS 400.76

Soil (Pakistan)

EU041794

EU041851

 

KX348077

 

R. cucurbitae

CBS 132087T = CPC 19423

On fruit of Cucurbita maxima (USA)

NR_120082

NG042613

   

R. luteum

CBS 132088T = CPC 18961

On fruit of Malus domestica (China)

NR_119684

JQ622099

   

Ramularia endophylla

CBS 113265ET (ex-epitype of Sphaeria punctiformis)

On dead leaves of Quercus robur

KF901725

KF902072

 

KP894673

 

R. glennii

CBS 129441T

From human bronchoalveolar lavage fluid (The Netherlands)

KJ504769

KJ504728

 

KJ504640

 

Readeriella menaiensis

CBS 125003T = CPC 14447

On leaves of Eucalyptus oblonga (Australia)

KX348084

KF901870

 

KX348084

 

R. tasmanica

CBS 125002T = CPC 13631

On leaves of Eucalytus delegatensis (Australia)

KF901761

KF902116

 

KX348086

 

Schizothyrium pomi

CBS 486.50

On Polygonum sachalinense (The Netherlands)

EF134948

KF902024

   
 

CBS 228.57

Unknown host (Italy)

EF134947

KF902007

   

Teratosphaeria fibrillosa

CBS 121707ET = CPC 13960

On leaves of Protea sp. (South Africa)

KF901728

KF902075

 

LT799765

 

T. fimbriata

CBS 120736T = CPC 13324 (ex-type of Mycosphaerella fimbriata)

On leaves of Corymbia sp. (Australia)

KF901577

KF901901

 

LT799766

 

T. molleriana

CBS 118359 = CMW 11560

On Eucalyptus globulus (Australia)

KF901764

KF902120

 

KX348104

 

Toxicocladosporium banksiae

CBS 128215T = CPC 17280

On leaves of Banksia emulata (Australia)

HQ599598

HQ599599

LT821371

LT799767

KY706597

T. cacti sp. nov.

URM 7489T = CBS 141539

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752806

KY752819

LT821361

LT799768

KY706587

 

URM 7490 = CBS141538

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752813

KY752826

LT821368

LT799769

KY706594

 

188 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752803

KY752816

LT821358

LT799770

KY706584

 

191 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752804

KY752817

LT821359

LT799771

KY706585

 

192 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752805

KY752818

LT821360

LT799772

KY706586

 

195–2 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752807

KY752820

LT821362

 

KY706588

 

225 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752808

KY752821

LT821363

LT799773

KY706589

 

226 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752809

KY752822

LT821364

LT799777

KY706590

 

231 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752810

KY752823

LT821365

LT799774

KY706591

 

235 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752811

KY752824

LT821366

LT799775

KY706592

 

236 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752812

KY752825

LT821367

LT799776

KY706593

 

261–2 JB

Endophyte from Pilosocereus gounellei subsp. gounellei (Brazil)

KY752814

KY752827

LT821369

 

KY706595

T. chlamydosporum

CBS 124157T = CPC 15709 (ex-type of T. chlamydosporum)

On leaf of Eucalyptus camaldulensis (Madagascar)

FJ790283

FJ790301

LT821372

LT799778

KY706598

 

CBS 124159T = CPC 15736 (ex-type of T. velox)

On leaf of Eucalyptus camaldulensis (Madagascar)

FJ790288

FJ790306

LT821383

LT799779

KY706609

T. ficiniae

CBS 136406T = CPC 21283

On leaves of Ficinia indica (South Africa)

KF777190

KF777241

LT821373

LT799780

KY706599

T. hominis

CBS 140694T = FMR13297

From human bronchoalveolar lavage fluid (USA)

LN834444

KY752829

LT821374

LT799781

KY706600

T. immaculatum sp. nov.

URM 7491T = CBS 141540

Endophyte from Melocactus zehntneri (Brazil)

KY752815

KY752828

LT821370

LT799782

KY706596

T. irritans

CBS 185.58T

From mouldy paint (Suriname)

EU040243

EU040243

LT821375

LT799783

KY706601

T. pini

CBS 138005T = CPC 23639

On needles of Pinus sp. (China)

KJ869160

KJ869217

LT821377

LT799784

KY706603

T. posoqueriae

CBS 133583T = CPC 19305

On leaves of Posoqueria latifolia (Australia)

NR121555

KC005803

LT821378

LT799785

KY706604

T. protearum

CBS 126499T = CPC 15254

On leaves of Protea burchellii (South Africa)

HQ599586

HQ599587

LT821379

LT799786

KY706605

T. pseudoveloxum

CBS 128775T = CPC 18527

On leaf bracts of Phaenocoma prolifera (South Africa)

JF499847

JF499867

LT821380

 

KY706606

T. rubrigenum

CBS 124158T = CPC 15735

On leaf of Eucalyptus camaldulensis (Madagascar)

FJ790287

FJ790305

LT821381

LT799787

KY706607

T. strelitziae

CBS 132535T = CPC 19762

On leaves of Strelitzia reginae (South Africa)

NR111765

JX069858

LT821382

LT799788

KY706608

Undescribed species

CPC 29168

On Cyperaceae (Australia)

LT799742

LT799749

 

LT799789

 

Undescribed species

CPC 29170

On Cyperaceae (Australia)

LT799743

LT799750

 

LT799790

 

Uwebraunia australiensis

CBS 120729T = CPC 13282

On Eucalyptus platyphylla (Australia)

KF442513

GQ852588

 

LT799791

 

U. commune

CBS 110809T = CPC 830

On Eucalyptus nitens (South Africa)

AY725536

KJ564336

   

U. dekkeri

CPC 13264

On Eucalyptus molucana (Australia)

GQ852741

GQ852593

 

LT799792

 

Verrucocladosporium dirinae

CBS 112794T

On lichen Dirina massiliensis (United Kingdom)

EU040244

EU040244

   
  1. 1 CBS: Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands; CCFEE: Culture collection from extreme environments of the Dipartamento di Scienze Ambientali, University of Tuscia, Viterbo, Italy; CMW: Culture collection of the Forestry and Agricultural Biotechnology Institute (FABI) of the University of Pretoria, Pretoria, South Africa; CPC: Culture collection of P.W. Crous, held at the Westerdijk Fungal Biodiversity Institute; FMR: Facultat de Medicina i Ciències de la Salut, Universitat Rovira i Virgili, Reus, Spain; JB: Collection of J.D.P. Bezerra, housed at URM; TRN: C. Ruibal private collection, currently in MAF; URM: Micoteca URM Profa. MariaAuxiliadora Cavalcanti, Departamento de Micologia Prof. Chaves Batista, Universidade Federal de Pernambuco, Brazil. T ex-type strain, ET ex-epitype strain.
  2. 2 ITS: first and second internal transcribed spacer regions and intervening 5.8S nrDNA; LSU: nuclear ribosomal large subunit of the rDNA; actA: actin gene; rpb2: RNA polymerase second largest subunit gene; tub2: β-tubulin gene. Names of the new taxa and sequences newly obtained in this study are shown in bold.