Table 1 Sources of isolates and GenBank accession numbers used in the phylogenetic analyses of Diaporthaceae.
Species names* | Culture collection no. | Isolation sources | Country | GenBank Accession Numbers | References | ||
|---|---|---|---|---|---|---|---|
ITS | LSU | TEF1 | |||||
D. acaciigena | CBS 129521 (ex-type) | Acacia retinodes | Australia | KC343005 | - | KC343731 | Gomes et al. (2013) |
D. ampelina | FAU 586 | Vitis sp. | USA: New York | - | AF439635 | - | - |
D. angelicae | CBS 111592 | Heracleum sphondylium | Austria | KC343027 | - | KC343753 | Gomes et al. (2013) |
| Â | AR 3724 | Heracleum sphondylium | Austria | KC343026 | - | KC343752 | Gomes et al. (2013) |
D. apiculata | LC 3418 (ex-type) | Camellia sinensis | China | KP267896 | KY011852 | KP267970 | This study |
| Â | LC 3452 | Camellia sinensis | China | KP267901 | KY011853 | KP267975 | This study |
D. arecae complex | LC 4155 | Rhododendron sp. | China | KY011895 | KY011879 | KY011906 | This study |
| Â | LC 4159 | Rhododendron sp. | China | KY011896 | KY011880 | KY011907 | This study |
| Â | LC 4164 | Unknown host | China | KY011897 | KY011881 | KY011908 | This study |
D. biguttusis | LC1106 (ex-type) | Lithocarpus glaber | China | KF576282 | KY011878 | KF576257 | This study |
D. compacta | LC 3078 | Camellia sinensis | China | KP267850 | KY011839 | KP267924 | This study |
| Â | LC 3083 (ex-type) | Camellia sinensis | China | KP267854 | KY011840 | KP267928 | This study |
| Â | LC 3084 | Camellia sinensis | China | KP267855 | KY011841 | KP267929 | This study |
D. decedens | CBS 109772 | Corylus avellana | Austria | KC343059 | - | KC343785 | Gomes et al. (2013) |
D. detrusa | CBS 109770 | Berberis vulgaris | Austria | KC343061 | - | KC343787 | Gomes et al. (2013) |
D. discoidispora | LC 3503 | Camellia sinensis | China | KY011887 | KY011854 | KY011898 | This study |
D. elaeagni-glabrae | LC 4802 (ex-type) | Elaeagnus glabra | China | KX986779 | KY011885 | KX999171 | This study |
| Â | LC 4806 | Elaeagnus glabra | China | KX986780 | KY011886 | KX999172 | This study |
D. ellipicola | LC0810 (ex-type) | Lithocarpus glaber | China | KF576270 | KY011873 | KF576245 | This study |
D. eres | LC 3198 | Camellia sinensis | China | KP267873 | KY011845 | KP267947 | This study |
| Â | LC 3205 | Camellia sinensis | China | KP714499 | KY011846 | KP714511 | This study |
| Â | LC 3206 | Camellia sinensis | China | KP714500 | KY011847 | KP714512 | This study |
| Â | CBS 109767 | Acer campestre | Austria | KC343075 | - | KC343801 | Gomes et al. (2013) |
D. fusicola | LC 1126 | Lithocarpus glaber | China | KF576281 | KY011836 | KF576256 | This study |
| Â | LC 0778 (ex-type) | Lithocarpus glaber | China | KF576263 | KY011877 | KF576238 | This study |
D. hongkongensis | LC 0784 | Lithocarpus glaber | China | KC153104 | KY011876 | KC153095 | This study |
| Â | LC 0812 | Smilax china | China | KC153103 | KY011875 | KC153094 | This study |
D. incompleta | LC 6706 | Camellia sinensis | China | KX986793 | KY011859 | KX999185 | This study |
| Â | LC 1127 (ex-type) | Lithocarpus glaber | China | KF576267 | KY011837 | KF576242 | This study |
D. mahothocarpi | LC 0732 | Mahonia bealei | China | KC153097 | KY011872 | KC153088 | This study |
| Â | LC 0763 (ex-type) | Lithocarpus glaber | China | KC153096 | KY011871 | KC153087 | This study |
D. masirevicii | Diaporthe sp. | Camellia sinensis | China | KY011888 | KY011861 | KY011899 | This study |
D. neoarctii | CBS 109490 | Ambrosia trifida | USA: New Jersey | KC343145 | - | KC343871 | Gomes et al. (2013) |
D. oncostoma | CBS 109741 | Robinia pseudoacacia | Russia | KC343161 | - | KC343887 | Gomes et al. (2013) |
D. oraccinii | LC 3166 (ex-type) | Camellia sinensis | China | KP267863 | KY011843 | KP267937 | This study |
| Â | LC 3172 | Camellia sinensis | China | KP267864 | KY011844 | KP267938 | This study |
| Â | LC 3296 | Camellia sinensis | China | KP267884 | KY011849 | KP267958 | This study |
D. ovoicicola | LC 1128 (ex-type) | Lithocarpus glaber | China | KF576264 | KY011838 | KF576239 | This study |
D. penetriteum | LC 3215 | Camellia sinensis | China | KP267879 | KY011848 | KP267953 | This study |
| Â | LC 3353 (ex-type) | Camellia sinensis | China | KP714505 | KY011850 | KP714517 | This study |
| Â | LC 3394 | Camellia sinensis | China | KP267893 | KY011851 | KP267967 | This study |
D. perjuncta | CBS 109745 | Ulmus glabra | Austria | KC343172 | - | KC343898 | Gomes et al. (2013) |
D. pseudophoenicicola | LC 6150 | Phoenix canariensis | China | KY011891 | KY011865 | KY011902 | This study |
| Â | LC 6151 | Phoenix canariensis | China | KY011892 | KY011866 | KY011903 | This study |
D. pustulata | CBS 109742 | Acer pseudoplatanus | Austria | KC343185 | - | KC343911 | Gomes et al. (2013) |
| Â | CBS 109760 | Acer pseudoplatanus | Austria | KC343186 | - | KC343912 | Gomes et al. (2013) |
| Â | CBS 109784 | Prunus padus | Austria | KC343187 | - | KC343913 | Gomes et al. (2013) |
D. rudis | LC 6147 | Dendrobenthamia japonica | USA | KY011890 | KY011864 | KY011901 | This study |
| Â | LC 6145 | Ilex aquifolium | China | KY011889 | KY011863 | KY011900 | This study |
D. saccarata | CBS 116311 | Protea repens, cankers | South Africa | KC343190 | - | KC34391 | Gomes et al. (2013) |
D. sclerotioides | CBS 296.67 | Cucumis sativus | Netherlands | KC343193 | - | KC343919 | Gomes et al. (2013) |
D. tectonendophytica | LC 6623 | Unknown host | China | KX986795 | KY011857 | KX999187 | This study |
D. tectonigena | LC 6512 | Camellia sinensis | China | KX986782 | KY011856 | KX999174 | This study |
D. ternstroemiae | LC 0777 (ex-type) | Ternstroemia gymnanthera | China | KC153098 | KY011874 | KC153089 | This study |
D. ueckerae | LC 3564 | Camellia sinensis | China | KP267912 | KY011855 | KP267986 | This study |
D. undulata | LC 6624 | Unknown host | China | KX986798 | KY011858 | KX999190 | This study |
D. velutina | LC 4414 | Lithocapus sp. | China | KX986788 | KY011882 | KX999180 | This study |
| Â | LC 4419 | Neolitsea sp. | China | KX986789 | KY011883 | KX999181 | This study |
| Â | LC 4421 (ex-type) | Neolitsea sp. | China | KX986790 | KY011884 | KX999182 | This study |
D. xishuangbanica | LC 6707 | Camellia sinensis | China | KX986783 | KY011860 | KX999175 | This study |
| Â | LC 6744 | Camellia sinensis | China | KX986784 | KY011862 | KX999176 | This study |
D. yunnanensis | LC 6168 | Coffea sp. | China | KX986796 | KY011867 | KX999188 | This study |
Diaporthe sp. | LC 3156 | Camellia sinensis | China | KP267861 | KY011842 | KP267935 | This study |
| Â | LC 6170 | Coffea sp. | China | KY011893 | KY011869 | KY011904 | This study |
| Â | LC 6171 | Solanum melongena | China | KY011894 | KY011870 | KY011905 | This study |
| Â | LC 6232 | Theobroma cacao | China | KX986797 | KY011868 | KX999189 | This study |
Mazzantia napelli | AR 3498 | Aconitum vulparia | Austria | - | AF408368 | EU222017 | Castlebury et al. (2002) |
Ophiodiaporthe cyatheae | BCRC 34961 | Cyathea lepifera | Taiwan | JX570889 | JX570891 | KC465406 | Fu et al. (2013) |
Phaeocytostroma ambiguum | CPC 17071 | Zea mays | South Africa | FR748036 | - | FR748068 | Lamprecht et al. (2011) |
| Â | CPC 17072 | Zea mays | South Africa | FR748037 | FR748096 | FR748069 | Lamprecht et al. (2011) |
Ph. plurivorum | CBS 113835 | Helianthus annuus | Portugal | FR748046 | FR748104 | FR748078 | Lamprecht et al. (2011) |
Ph. sacchari | CBS 275.34 | - | Japan | FR748047 | FR748105 | FR748079 | Lamprecht et al. (2011) |
Ph. megalosporum | CBS 284.65 | Rice-field soil | India | FR748045 | FR748103 | FR748077 | Lamprecht et al. (2011) |
Pustulomyces bambusicola | MFLUCC 11-0436 | on dead culm of bamboo | Thailand | - | KF806753 | KF806755 | Dai et al. (2014) |
Stenocarpella macrospora | CBS 117560 | Rain damaged Bt maize hybrid, 2003–04 season | South Africa | FR748048 | DQ377934 | - | Lamprecht et al. (2011) |
S. maydis | CBS 117558 | Traditional/landrace maize from 2003/04 season | South Africa | FR748051 | DQ377936 | FR748080 | Lamprecht et al. (2011) |
Valsa ambiens | CFCC 89894 | Pyrus bretschneideri | China | KR045617 | KR045699 | KU710912 | Fan et al. (2014) |