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Table 1 Collection details and GenBank accession numbers of isolates included in this study.

From: Emerging citrus diseases in Europe caused by species of Diaporthe

Species Culture no. 1 Host Locality Associated symptoms    GenBank no. 2   
ITS tub2 his3 tef1 cal
D. angelicae CBS 111592 Heracleum sphondylium Austria - KC343026 KC343994 KC343511 KC343752 KC343268
D. arecae CBS 161.64 Areca catechu India - KC343032 KC344000 KC343516 KC343758 KC343274
  CBS 535.75 Citrus sp. Suriname - KC343033 KC344001 KC343517 KC343759 KC343275
D. arengae CBS 114979 Arenga engleri Hong Kong - KC343034 KC344002 KC343518 KC343760 KC343276
D. baccae CBS 136972 Vaccinium corymbosum Italy - KJ160565 MF418509 MF418264 KJ160597 -
  CPC 26170 = CBS 142545 Citrus sinensis ‘Tarocco Tapi’ Italy, Catania Twig dieback MF418351 MF418510 MF418265 MF418430 MF418185
  CPC 26465 Citrus limon Italy, Catania Branch canker MF418352 MF418511 MF418266 MF418431 MF418186
  CPC 26963 Citrus paradisi Italy, Vibo Valentia Branch canker MF418353 MF418512 MF418267 MF418432 MF418187
  CPC 27029 Citrus sinensis Italy, Vibo Valentia Twig dieback MF418354 MF418513 MF418268 MF418433 MF418188
  CPC 27075 Citrus limon Italy, Vibo Valentia Twig dieback MF418355 MF418514 MF418269 MF418434 MF418189
  CPC 27079 Citrus limon Italy, Vibo Valentia Twig dieback MF418356 MF418515 MF418270 MF418435 MF418190
  CPC 27821 Citrus reticulata ‘Caffin’ Italy, Cosenza Trunk canker MF418357 MF418516 MF418271 MF418436 MF418191
  CPC 27831 = CBS 142546 Citrus sinensis Italy, Catania Trunk canker MF418358 MF418517 MF418272 MF418437 MF418192
  CPC 27834 Citrus sinensis Italy, Catania Trunk canker MF418359 MF418518 MF418273 MF418438 MF418193
  CPC 27835 Citrus sinensis Italy, Catania Trunk canker MF418360 MF418519 MF418274 MF418439 MF418194
  CPC 27836 Citrus sinensis Italy, Catania Trunk canker MF418361 MF418520 MF418275 MF418440 MF418195
  CPC 27837 Citrus sinensis Italy, Catania Trunk canker MF418362 MF418521 MF418276 MF418441 MF418196
  CPC 27850 Citrus sinensis Italy, Catania Twig dieback MF418363 MF418522 MF418277 MF418442 MF418197
  CPC 27852 Citrus sinensis Italy, Catania Twig dieback MF418364 MF418523 MF418278 MF418443 MF418198
D. biconispora ICMP20654 Citrus grandis China - KJ490597 KJ490418 KJ490539 KJ490476 -
D. biguttulata ICMP20657 Citrus limon China - KJ490582 KJ490403 KJ490524 KJ490461 -
D. citri CBS 134237 Citrus reticulata China - JQ954660 KC357426 MF418279 JQ954676 KC357465
  CBS 134239 Citrus sinensis Florida, USA - KC357553 KC357456 MF418280 KC357522 KC357488
  CBS 135422 Citrus sp. USA - KC843311 KC843187 MF418281 KC843071 KC843157
D. citriasiana CBS 134240 Citrus unshiu China - JQ954645 KC357459 MF418282 JQ954663 KC357491
D. citrichinensis CBS 134242 Citrus sp. China - JQ954648 MF418524 KJ420880 JQ954666 KC357494
D. cuppatea CBS 117499 Aspalathus linearis South Africa - AY339322 JX275420 KC343541 AY339354 JX197414
D. cytosporella CBS 137020 Citrus limon Spain - KC843307 KC843221 MF418283 KC843116 KC843141
D. discoidispora ICMP20662 Citrus unshiu China - KJ490624 KJ490445 KJ490566 KJ490503 -
D. endophytica ZJUD73 Citrus unshiu China - KJ490608 KJ490429 KJ490550 KJ490487 -
D. eres CBS 439.82 Cotoneaster sp. Scotland - KC343090 KC344058 KC343574 KC343816 KC343332
D. foeniculina CBS 187.27 Camellia sinensis Italy - KC343107 KC344075 KC343591 KC343833 KC343349
  CBS 111553 Foeniculum vulgare Spain - KC343101 KC344069 KC343585 KC343827 KC343343
  CBS 111554 Foeniculum vulgare Portugal - KC343102 KC344070 KC343586 KC343828 KC343344
  CBS 123208 Foeniculum vulgare Portugal - KC343104 KC344072 KC343588 KC343830 KC343346
  CBS 123209 Foeniculum vulgare Portugal - KC343105 KC344073 KC343589 KC343831 KC343347
  CBS 135430 Citrus limon USA - KC843301 KC843215 MF418284 KC843110 KC843135
  CPC 26184 Citrus maxima Italy, Messina Branch canker MF418365 MF418525 MF418285 MF418444 MF418199
  CPC 26194 Citrus sinensis ‘Sanguinello’ Italy, Messina Branch canker MF418366 MF418526 MF418286 MF418445 MF418200
  CPC 26365 Citrus limon Italy, Catania Twig dieback MF418367 MF418527 MF418287 MF418446 MF418201
  CPC 26439 Citrus reticulata Italy, Catania Twig dieback MF418368 MF418528 MF418288 MF418447 MF418202
  CPC 26441 Citrus reticulata Italy, Catania Twig dieback MF418369 MF418529 MF418289 MF418448 MF418203
  CPC 26461 Citrus reticulata Italy, Catania Twig dieback MF418370 MF418530 MF418290 MF418449 MF418204
  CPC 26863 Citrus maxima Greece, Missolonghi Branch canker MF418371 MF418531 MF418291 MF418450 MF418205
  CPC 26873 Citrus reticulata Greece, Arta Twig dieback MF418372 MF418532 MF418292 MF418451 MF418206
  CPC 26883 Citrus maxima Greece, Missolonghi Branch canker MF418373 MF418533 MF418293 MF418452 MF418207
  CPC 26885 Citrus bergamia Greece, Missolonghi Branch canker MF418374 MF418534 MF418294 MF418453 MF418208
  CPC 26913 Citrus limon Greece, Missolonghi Branch canker MF418375 MF418535 MF418295 MF418454 MF418209
  CPC 26923 Citrus maxima Greece, Missolonghi Branch canker MF418376 MF418536 MF418296 MF418455 MF418210
  CPC 26927 Citrus maxima Greece, Missolonghi Branch canker MF418377 MF418537 MF418297 MF418456 MF418211
  CPC 26953 Citrus bergamia Greece, Missolonghi Branch canker MF418378 MF418538 MF418298 MF418457 MF418212
  CPC 26967 Citrus mitis Italy, Messina Twig dieback MF418379 MF418539 MF418299 MF418458 MF418213
  CPC 26971 Citrus mitis Italy, Messina Twig dieback MF418380 MF418540 MF418300 MF418459 MF418214
  CPC 27027 Citrus limon Italy, Cosenza Branch canker MF418381 MF418541 MF418301 MF418460 MF418215
  CPC 27033 Citrus mitis Italy, Messina Twig dieback MF418382 MF418542 MF418302 MF418461 MF418216
  CPC 27037 Citrus paradisi Italy, Vibo Valentia Branch canker MF418383 MF418543 MF418303 MF418462 MF418217
  CPC 27041 Citrus sinensis Italy, Cosenza Branch canker MF418384 MF418544 MF418304 MF418463 MF418218
  CPC 27167 Citrus paradisi Italy, Vibo Valentia Branch canker MF418385 MF418545 MF418305 MF418464 MF418219
  CPC 27756 Citrus limon Italy, Catania Trunk canker MF418386 MF418546 MF418306 MF418465 MF418220
  CPC 27832 Citrus sinensis Italy, Catania Trunk canker MF418387 MF418547 MF418307 MF418466 MF418221
  CPC 27833 Citrus sinensis Italy, Catania Trunk canker MF418388 MF418548 MF418308 MF418467 MF418222
  CPC 27859 Citrus paradisi Malta, Gozo Trunk canker MF418389 MF418549 MF418309 MF418468 MF418223
  CPC 27877 Citrus limon Malta, Gozo Trunk canker MF418390 MF418550 MF418310 MF418469 MF418224
  CPC 27895 Citrus japonica Malta, Gozo Twig dieback MF418391 MF418551 MF418311 MF418470 MF418225
  CPC 27896 Citrus japonica Malta, Gozo Twig dieback MF418392 MF418552 MF418312 MF418471 MF418226
  CPC 27897 Citrus japonica Malta, Gozo Twig dieback MF418393 MF418553 MF418313 MF418472 MF418227
  CPC 27898 Citrus japonica Malta, Gozo Twig dieback MF418394 MF418554 MF418314 MF418473 MF418228
  CPC 27901 Citrus limon Malta, Gozo Branch canker MF418395 MF418555 MF418315 MF418474 MF418229
  CPC 27903 Citrus limon Malta, Gozo Branch canker MF418396 MF418556 MF418316 MF418475 MF418230
  CPC 27945 Citrus paradisi Portugal, Faro Branch canker MF418397 MF418557 MF418317 MF418476 MF418231
  CPC 27947 Citrus sinensis Portugal, Faro Branch canker MF418398 MF418558 MF418318 MF418477 MF418232
  CPC 27949 Citrus sinensis Portugal, Faro Branch canker MF418399 MF418559 MF418319 MF418478 MF418233
  CPC 27950 Citrus sinensis Portugal, Faro Twig dieback MF418400 MF418560 MF418320 MF418479 MF418234
  CPC 27959 Citrus sinensis Portugal, Faro Twig dieback MF418401 MF418561 MF418321 MF418480 MF418235
  CPC 28033 = CBS 142547 Citrus sinensis ‘Valencia’ Portugal, Mesquita Twig dieback MF418402 MF418562 MF418322 MF418481 MF418236
  CPC 28035 Citrus paradisi Portugal, Faro Twig dieback MF418403 MF418563 MF418323 MF418482 MF418237
  CPC 28039 Citrus limon Portugal, Monchique Twig dieback MF418404 MF418564 MF418324 MF418483 MF418238
  CPC 28041 Citrus limon Portugal, Monchique Twig dieback MF418405 MF418565 MF418325 MF418484 MF418239
  CPC 28043 Citrus limon Portugal, Monchique Twig dieback MF418406 MF418566 MF418326 MF418485 MF418240
  CPC 28045 Citrus limon Portugal, Monchique Twig dieback MF418407 MF418567 MF418327 MF418486 MF418241
  CPC 28047 Citrus limon Portugal, Monchique Twig dieback MF418408 MF418568 MF418328 MF418487 MF418242
  CPC 28071 Citrus limon Spain, Algemesi Twig dieback MF418409 MF418569 MF418329 MF418488 MF418243
  CPC 28072 Citrus limon Spain, Algemesi Twig dieback MF418410 MF418570 MF418330 MF418489 MF418244
  CPC 28073 Citrus reticulata Spain, Algemesi Twig dieback MF418411 MF418571 MF418331 MF418490 MF418245
  CPC 28074 Citrus reticulata Spain, Algemesi Twig dieback MF418412 MF418572 MF418332 MF418491 MF418246
  CPC 28077 Citrus limon Spain, Algemesi Twig dieback MF418413 MF418573 MF418333 MF418492 MF418247
  CPC 28079 Citrus reticulata Spain, Algemesi Twig dieback MF418414 MF418574 MF418334 MF418493 MF418248
  CPC 28081 = CBS 142548 Citrus reticulata Spain, Algemesi Twig dieback MF418415 MF418575 MF418335 MF418494 MF418249
  CPC 28163 Microcitrus australasica Italy, Catania Twig dieback MF418416 MF418576 MF418336 MF418495 MF418250
  CPC 31135 Citrus limon Malta, Gozo Branch canker MF418417 MF418577 MF418337 MF418496 MF418251
  CPC 31159 Citrus sinensis Malta, Zurrieq Branch canker MF418418 MF418578 MF418338 MF418497 MF418252
D. helianthi CBS 344.94 Helianthus annuus - - KC343114 KC344082 KC343598 KC343840 KC343356
  CBS 592.81 Helianthus annuus Serbia - KC343115 KC344083 KC343599 KC343841 JX197454
D. hongkongensis CBS 115448 Dichroa febrifuga China - KC343119 KC344087 KC343603 KC343845 KC343361
D. inconspicua CBS 133813 Maytenus ilicifolia Brazil - KC343123 KC344091 KC343607 KC343849 KC343365
D. infertilis CBS 199.39 Unknown Italy - KC343051 KC344019 KC343535 KC343777 KC343293
  CBS 230.52 Citrus sinensis Suriname - KC343052 KC344020 KC343536 KC343778 KC343294
  CPC 20322 Glycine max Brazil - KC343053 KC344021 KC343537 KC343779 KC343295
D. limonicola CPC 27869 Citrus limon Malta, Gozo Trunk canker MF418419 MF418579 MF418339 MF418498 MF418253
  CPC 27871 Citrus limon Malta, Gozo Trunk canker MF418420 MF418580 MF418340 MF418499 MF418254
  CPC 27879 Citrus limon Malta, Gozo Branch canker MF418421 MF418581 MF418341 MF418500 MF418255
  CPC 28200 = CBS 142549 Citrus limon Malta, Gozo Branch canker MF418422 MF418582 MF418342 MF418501 MF418256
  CPC 31137 = CBS 142550 Citrus limon Malta, Zurrieq Branch canker MF418423 MF418583 MF418343 MF418502 MF418257
D. melitensis CPC 27873 = CBS 142551 Citrus limon Malta, Gozo Branch canker MF418424 MF418584 MF418344 MF418503 MF418258
  CPC 27875 = CBS 142552 Citrus limon Malta, Gozo Branch canker MF418425 MF418585 MF418345 MF418504 MF418259
D. multigutullata ICMP20656 Citrus grandis China - KJ490633 KJ490454 KJ490575 KJ490512 -
D. novem CBS 127270 Glycine max Croatia - KC343156 KC344124 KC343640 KC343882 KC343398
  CBS 127271 Glycine max Croatia - KC343157 KC344125 KC343641 KC343883 KC343399
  CPC 26188 = CBS 142553 Citrus japonica Italy, Messina Twig dieback MF418426 MF418586 MF418346 MF418505 MF418260
  CPC 28165 = CBS 142554 Citrus aurantiifolia Italy, Catania Twig dieback MF418427 MF418587 MF418347 MF418506 MF418261
  CPC 28167 Citrus aurantiifolia Italy, Catania Twig dieback MF418428 MF418588 MF418348 MF418507 MF418262
  CPC 28169 Citrus aurantiifolia Italy, Catania Twig dieback MF418429 MF418589 MF418349 MF418508 MF418263
D. ovalispora ICMP20659 Citrus limon China - KJ490628 KJ490449 KJ490570 KJ490507 -
D. pseudomangiferae CBS 101339 Mangifera indica Dominican Republic - KC343181 KC344149 KC343665 KC343907 KC343423
D. pseudophoenicicola CBS 462.69 Phoenix dactylifera Spain - KC343184 KC344152 KC343668 KC343910 KC343426
D. rudis CBS 113201 Vitis vinifera Portugal - KC343234 KC344202 KC343718 KC343960 KC343476
D. saccarata CBS 116311 Protea repens South Africa - KC343190 KC344158 KC343674 KC343916 KC343432
D. sojae FAU 635 Glycine max USA - KJ590719 KJ610875 KJ659208 KJ590762 -
D. sojae ZJUD68 Citrus unshiu China - KJ490603 KJ490424 KJ490545 KJ490482 -
D. sterilis CBS 136969 Vaccinium corymbosum Italy - KJ160579 KJ160528 MF418350 KJ160611 KJ160548
D. subclavata ICMP20663 Citrus unshiu China - KJ490630 KJ490451 KJ490572 KJ490509 -
D. unshiuensis CGMCC3.17569 Citrus unshiu China - KJ490587 KJ490408 KJ490529 KJ490466 -
Diaporthella corylina CBS 121124 Corylus sp. China - KC343004 KC343972 KC343488 KC343730 KC343246
  1. 1 CPC: Culture collection of P.W. Crous, housed at Westerdijk Fungal Biodiversity Institute; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CGMCC: China, General Microbiological Culture Collection, Beijing, China; FAU: Isolates in culture collection of Systematic Mycology and Microbiology Laboratory, USDA-ARS, Beltsville, MD, USA; ICMP: International Collection of Microorganisms from Plants, Landcare Research, Auckland, New Zealand; ZJUD, Diaporthe strains in Zhejiang University, China. Ex-type and ex-epitype cultures are indicated in bold.
  2. 2 ITS: internal transcribed spacers 1 and 2 together with 5.8S nrDNA; tub2: partial beta-tubulin gene; his3: histone3; tef1: partial translation elongation factor 1-α gene; cal: partial calmodulin gene. Sequences generated in this study indicated in italics.