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Table 1 Collection details and GenBank accession numbers of isolates included in this study.

From: Emerging citrus diseases in Europe caused by species of Diaporthe

Species

Culture no. 1

Host

Locality

Associated symptoms

  

GenBank no. 2

  

ITS

tub2

his3

tef1

cal

D. angelicae

CBS 111592

Heracleum sphondylium

Austria

-

KC343026

KC343994

KC343511

KC343752

KC343268

D. arecae

CBS 161.64

Areca catechu

India

-

KC343032

KC344000

KC343516

KC343758

KC343274

 

CBS 535.75

Citrus sp.

Suriname

-

KC343033

KC344001

KC343517

KC343759

KC343275

D. arengae

CBS 114979

Arenga engleri

Hong Kong

-

KC343034

KC344002

KC343518

KC343760

KC343276

D. baccae

CBS 136972

Vaccinium corymbosum

Italy

-

KJ160565

MF418509

MF418264

KJ160597

-

 

CPC 26170 = CBS 142545

Citrus sinensis ‘Tarocco Tapi’

Italy, Catania

Twig dieback

MF418351

MF418510

MF418265

MF418430

MF418185

 

CPC 26465

Citrus limon

Italy, Catania

Branch canker

MF418352

MF418511

MF418266

MF418431

MF418186

 

CPC 26963

Citrus paradisi

Italy, Vibo Valentia

Branch canker

MF418353

MF418512

MF418267

MF418432

MF418187

 

CPC 27029

Citrus sinensis

Italy, Vibo Valentia

Twig dieback

MF418354

MF418513

MF418268

MF418433

MF418188

 

CPC 27075

Citrus limon

Italy, Vibo Valentia

Twig dieback

MF418355

MF418514

MF418269

MF418434

MF418189

 

CPC 27079

Citrus limon

Italy, Vibo Valentia

Twig dieback

MF418356

MF418515

MF418270

MF418435

MF418190

 

CPC 27821

Citrus reticulata ‘Caffin’

Italy, Cosenza

Trunk canker

MF418357

MF418516

MF418271

MF418436

MF418191

 

CPC 27831 = CBS 142546

Citrus sinensis

Italy, Catania

Trunk canker

MF418358

MF418517

MF418272

MF418437

MF418192

 

CPC 27834

Citrus sinensis

Italy, Catania

Trunk canker

MF418359

MF418518

MF418273

MF418438

MF418193

 

CPC 27835

Citrus sinensis

Italy, Catania

Trunk canker

MF418360

MF418519

MF418274

MF418439

MF418194

 

CPC 27836

Citrus sinensis

Italy, Catania

Trunk canker

MF418361

MF418520

MF418275

MF418440

MF418195

 

CPC 27837

Citrus sinensis

Italy, Catania

Trunk canker

MF418362

MF418521

MF418276

MF418441

MF418196

 

CPC 27850

Citrus sinensis

Italy, Catania

Twig dieback

MF418363

MF418522

MF418277

MF418442

MF418197

 

CPC 27852

Citrus sinensis

Italy, Catania

Twig dieback

MF418364

MF418523

MF418278

MF418443

MF418198

D. biconispora

ICMP20654

Citrus grandis

China

-

KJ490597

KJ490418

KJ490539

KJ490476

-

D. biguttulata

ICMP20657

Citrus limon

China

-

KJ490582

KJ490403

KJ490524

KJ490461

-

D. citri

CBS 134237

Citrus reticulata

China

-

JQ954660

KC357426

MF418279

JQ954676

KC357465

 

CBS 134239

Citrus sinensis

Florida, USA

-

KC357553

KC357456

MF418280

KC357522

KC357488

 

CBS 135422

Citrus sp.

USA

-

KC843311

KC843187

MF418281

KC843071

KC843157

D. citriasiana

CBS 134240

Citrus unshiu

China

-

JQ954645

KC357459

MF418282

JQ954663

KC357491

D. citrichinensis

CBS 134242

Citrus sp.

China

-

JQ954648

MF418524

KJ420880

JQ954666

KC357494

D. cuppatea

CBS 117499

Aspalathus linearis

South Africa

-

AY339322

JX275420

KC343541

AY339354

JX197414

D. cytosporella

CBS 137020

Citrus limon

Spain

-

KC843307

KC843221

MF418283

KC843116

KC843141

D. discoidispora

ICMP20662

Citrus unshiu

China

-

KJ490624

KJ490445

KJ490566

KJ490503

-

D. endophytica

ZJUD73

Citrus unshiu

China

-

KJ490608

KJ490429

KJ490550

KJ490487

-

D. eres

CBS 439.82

Cotoneaster sp.

Scotland

-

KC343090

KC344058

KC343574

KC343816

KC343332

D. foeniculina

CBS 187.27

Camellia sinensis

Italy

-

KC343107

KC344075

KC343591

KC343833

KC343349

 

CBS 111553

Foeniculum vulgare

Spain

-

KC343101

KC344069

KC343585

KC343827

KC343343

 

CBS 111554

Foeniculum vulgare

Portugal

-

KC343102

KC344070

KC343586

KC343828

KC343344

 

CBS 123208

Foeniculum vulgare

Portugal

-

KC343104

KC344072

KC343588

KC343830

KC343346

 

CBS 123209

Foeniculum vulgare

Portugal

-

KC343105

KC344073

KC343589

KC343831

KC343347

 

CBS 135430

Citrus limon

USA

-

KC843301

KC843215

MF418284

KC843110

KC843135

 

CPC 26184

Citrus maxima

Italy, Messina

Branch canker

MF418365

MF418525

MF418285

MF418444

MF418199

 

CPC 26194

Citrus sinensis ‘Sanguinello’

Italy, Messina

Branch canker

MF418366

MF418526

MF418286

MF418445

MF418200

 

CPC 26365

Citrus limon

Italy, Catania

Twig dieback

MF418367

MF418527

MF418287

MF418446

MF418201

 

CPC 26439

Citrus reticulata

Italy, Catania

Twig dieback

MF418368

MF418528

MF418288

MF418447

MF418202

 

CPC 26441

Citrus reticulata

Italy, Catania

Twig dieback

MF418369

MF418529

MF418289

MF418448

MF418203

 

CPC 26461

Citrus reticulata

Italy, Catania

Twig dieback

MF418370

MF418530

MF418290

MF418449

MF418204

 

CPC 26863

Citrus maxima

Greece, Missolonghi

Branch canker

MF418371

MF418531

MF418291

MF418450

MF418205

 

CPC 26873

Citrus reticulata

Greece, Arta

Twig dieback

MF418372

MF418532

MF418292

MF418451

MF418206

 

CPC 26883

Citrus maxima

Greece, Missolonghi

Branch canker

MF418373

MF418533

MF418293

MF418452

MF418207

 

CPC 26885

Citrus bergamia

Greece, Missolonghi

Branch canker

MF418374

MF418534

MF418294

MF418453

MF418208

 

CPC 26913

Citrus limon

Greece, Missolonghi

Branch canker

MF418375

MF418535

MF418295

MF418454

MF418209

 

CPC 26923

Citrus maxima

Greece, Missolonghi

Branch canker

MF418376

MF418536

MF418296

MF418455

MF418210

 

CPC 26927

Citrus maxima

Greece, Missolonghi

Branch canker

MF418377

MF418537

MF418297

MF418456

MF418211

 

CPC 26953

Citrus bergamia

Greece, Missolonghi

Branch canker

MF418378

MF418538

MF418298

MF418457

MF418212

 

CPC 26967

Citrus mitis

Italy, Messina

Twig dieback

MF418379

MF418539

MF418299

MF418458

MF418213

 

CPC 26971

Citrus mitis

Italy, Messina

Twig dieback

MF418380

MF418540

MF418300

MF418459

MF418214

 

CPC 27027

Citrus limon

Italy, Cosenza

Branch canker

MF418381

MF418541

MF418301

MF418460

MF418215

 

CPC 27033

Citrus mitis

Italy, Messina

Twig dieback

MF418382

MF418542

MF418302

MF418461

MF418216

 

CPC 27037

Citrus paradisi

Italy, Vibo Valentia

Branch canker

MF418383

MF418543

MF418303

MF418462

MF418217

 

CPC 27041

Citrus sinensis

Italy, Cosenza

Branch canker

MF418384

MF418544

MF418304

MF418463

MF418218

 

CPC 27167

Citrus paradisi

Italy, Vibo Valentia

Branch canker

MF418385

MF418545

MF418305

MF418464

MF418219

 

CPC 27756

Citrus limon

Italy, Catania

Trunk canker

MF418386

MF418546

MF418306

MF418465

MF418220

 

CPC 27832

Citrus sinensis

Italy, Catania

Trunk canker

MF418387

MF418547

MF418307

MF418466

MF418221

 

CPC 27833

Citrus sinensis

Italy, Catania

Trunk canker

MF418388

MF418548

MF418308

MF418467

MF418222

 

CPC 27859

Citrus paradisi

Malta, Gozo

Trunk canker

MF418389

MF418549

MF418309

MF418468

MF418223

 

CPC 27877

Citrus limon

Malta, Gozo

Trunk canker

MF418390

MF418550

MF418310

MF418469

MF418224

 

CPC 27895

Citrus japonica

Malta, Gozo

Twig dieback

MF418391

MF418551

MF418311

MF418470

MF418225

 

CPC 27896

Citrus japonica

Malta, Gozo

Twig dieback

MF418392

MF418552

MF418312

MF418471

MF418226

 

CPC 27897

Citrus japonica

Malta, Gozo

Twig dieback

MF418393

MF418553

MF418313

MF418472

MF418227

 

CPC 27898

Citrus japonica

Malta, Gozo

Twig dieback

MF418394

MF418554

MF418314

MF418473

MF418228

 

CPC 27901

Citrus limon

Malta, Gozo

Branch canker

MF418395

MF418555

MF418315

MF418474

MF418229

 

CPC 27903

Citrus limon

Malta, Gozo

Branch canker

MF418396

MF418556

MF418316

MF418475

MF418230

 

CPC 27945

Citrus paradisi

Portugal, Faro

Branch canker

MF418397

MF418557

MF418317

MF418476

MF418231

 

CPC 27947

Citrus sinensis

Portugal, Faro

Branch canker

MF418398

MF418558

MF418318

MF418477

MF418232

 

CPC 27949

Citrus sinensis

Portugal, Faro

Branch canker

MF418399

MF418559

MF418319

MF418478

MF418233

 

CPC 27950

Citrus sinensis

Portugal, Faro

Twig dieback

MF418400

MF418560

MF418320

MF418479

MF418234

 

CPC 27959

Citrus sinensis

Portugal, Faro

Twig dieback

MF418401

MF418561

MF418321

MF418480

MF418235

 

CPC 28033 = CBS 142547

Citrus sinensis ‘Valencia’

Portugal, Mesquita

Twig dieback

MF418402

MF418562

MF418322

MF418481

MF418236

 

CPC 28035

Citrus paradisi

Portugal, Faro

Twig dieback

MF418403

MF418563

MF418323

MF418482

MF418237

 

CPC 28039

Citrus limon

Portugal, Monchique

Twig dieback

MF418404

MF418564

MF418324

MF418483

MF418238

 

CPC 28041

Citrus limon

Portugal, Monchique

Twig dieback

MF418405

MF418565

MF418325

MF418484

MF418239

 

CPC 28043

Citrus limon

Portugal, Monchique

Twig dieback

MF418406

MF418566

MF418326

MF418485

MF418240

 

CPC 28045

Citrus limon

Portugal, Monchique

Twig dieback

MF418407

MF418567

MF418327

MF418486

MF418241

 

CPC 28047

Citrus limon

Portugal, Monchique

Twig dieback

MF418408

MF418568

MF418328

MF418487

MF418242

 

CPC 28071

Citrus limon

Spain, Algemesi

Twig dieback

MF418409

MF418569

MF418329

MF418488

MF418243

 

CPC 28072

Citrus limon

Spain, Algemesi

Twig dieback

MF418410

MF418570

MF418330

MF418489

MF418244

 

CPC 28073

Citrus reticulata

Spain, Algemesi

Twig dieback

MF418411

MF418571

MF418331

MF418490

MF418245

 

CPC 28074

Citrus reticulata

Spain, Algemesi

Twig dieback

MF418412

MF418572

MF418332

MF418491

MF418246

 

CPC 28077

Citrus limon

Spain, Algemesi

Twig dieback

MF418413

MF418573

MF418333

MF418492

MF418247

 

CPC 28079

Citrus reticulata

Spain, Algemesi

Twig dieback

MF418414

MF418574

MF418334

MF418493

MF418248

 

CPC 28081 = CBS 142548

Citrus reticulata

Spain, Algemesi

Twig dieback

MF418415

MF418575

MF418335

MF418494

MF418249

 

CPC 28163

Microcitrus australasica

Italy, Catania

Twig dieback

MF418416

MF418576

MF418336

MF418495

MF418250

 

CPC 31135

Citrus limon

Malta, Gozo

Branch canker

MF418417

MF418577

MF418337

MF418496

MF418251

 

CPC 31159

Citrus sinensis

Malta, Zurrieq

Branch canker

MF418418

MF418578

MF418338

MF418497

MF418252

D. helianthi

CBS 344.94

Helianthus annuus

-

-

KC343114

KC344082

KC343598

KC343840

KC343356

 

CBS 592.81

Helianthus annuus

Serbia

-

KC343115

KC344083

KC343599

KC343841

JX197454

D. hongkongensis

CBS 115448

Dichroa febrifuga

China

-

KC343119

KC344087

KC343603

KC343845

KC343361

D. inconspicua

CBS 133813

Maytenus ilicifolia

Brazil

-

KC343123

KC344091

KC343607

KC343849

KC343365

D. infertilis

CBS 199.39

Unknown

Italy

-

KC343051

KC344019

KC343535

KC343777

KC343293

 

CBS 230.52

Citrus sinensis

Suriname

-

KC343052

KC344020

KC343536

KC343778

KC343294

 

CPC 20322

Glycine max

Brazil

-

KC343053

KC344021

KC343537

KC343779

KC343295

D. limonicola

CPC 27869

Citrus limon

Malta, Gozo

Trunk canker

MF418419

MF418579

MF418339

MF418498

MF418253

 

CPC 27871

Citrus limon

Malta, Gozo

Trunk canker

MF418420

MF418580

MF418340

MF418499

MF418254

 

CPC 27879

Citrus limon

Malta, Gozo

Branch canker

MF418421

MF418581

MF418341

MF418500

MF418255

 

CPC 28200 = CBS 142549

Citrus limon

Malta, Gozo

Branch canker

MF418422

MF418582

MF418342

MF418501

MF418256

 

CPC 31137 = CBS 142550

Citrus limon

Malta, Zurrieq

Branch canker

MF418423

MF418583

MF418343

MF418502

MF418257

D. melitensis

CPC 27873 = CBS 142551

Citrus limon

Malta, Gozo

Branch canker

MF418424

MF418584

MF418344

MF418503

MF418258

 

CPC 27875 = CBS 142552

Citrus limon

Malta, Gozo

Branch canker

MF418425

MF418585

MF418345

MF418504

MF418259

D. multigutullata

ICMP20656

Citrus grandis

China

-

KJ490633

KJ490454

KJ490575

KJ490512

-

D. novem

CBS 127270

Glycine max

Croatia

-

KC343156

KC344124

KC343640

KC343882

KC343398

 

CBS 127271

Glycine max

Croatia

-

KC343157

KC344125

KC343641

KC343883

KC343399

 

CPC 26188 = CBS 142553

Citrus japonica

Italy, Messina

Twig dieback

MF418426

MF418586

MF418346

MF418505

MF418260

 

CPC 28165 = CBS 142554

Citrus aurantiifolia

Italy, Catania

Twig dieback

MF418427

MF418587

MF418347

MF418506

MF418261

 

CPC 28167

Citrus aurantiifolia

Italy, Catania

Twig dieback

MF418428

MF418588

MF418348

MF418507

MF418262

 

CPC 28169

Citrus aurantiifolia

Italy, Catania

Twig dieback

MF418429

MF418589

MF418349

MF418508

MF418263

D. ovalispora

ICMP20659

Citrus limon

China

-

KJ490628

KJ490449

KJ490570

KJ490507

-

D. pseudomangiferae

CBS 101339

Mangifera indica

Dominican Republic

-

KC343181

KC344149

KC343665

KC343907

KC343423

D. pseudophoenicicola

CBS 462.69

Phoenix dactylifera

Spain

-

KC343184

KC344152

KC343668

KC343910

KC343426

D. rudis

CBS 113201

Vitis vinifera

Portugal

-

KC343234

KC344202

KC343718

KC343960

KC343476

D. saccarata

CBS 116311

Protea repens

South Africa

-

KC343190

KC344158

KC343674

KC343916

KC343432

D. sojae

FAU 635

Glycine max

USA

-

KJ590719

KJ610875

KJ659208

KJ590762

-

D. sojae

ZJUD68

Citrus unshiu

China

-

KJ490603

KJ490424

KJ490545

KJ490482

-

D. sterilis

CBS 136969

Vaccinium corymbosum

Italy

-

KJ160579

KJ160528

MF418350

KJ160611

KJ160548

D. subclavata

ICMP20663

Citrus unshiu

China

-

KJ490630

KJ490451

KJ490572

KJ490509

-

D. unshiuensis

CGMCC3.17569

Citrus unshiu

China

-

KJ490587

KJ490408

KJ490529

KJ490466

-

Diaporthella corylina

CBS 121124

Corylus sp.

China

-

KC343004

KC343972

KC343488

KC343730

KC343246

  1. 1 CPC: Culture collection of P.W. Crous, housed at Westerdijk Fungal Biodiversity Institute; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CGMCC: China, General Microbiological Culture Collection, Beijing, China; FAU: Isolates in culture collection of Systematic Mycology and Microbiology Laboratory, USDA-ARS, Beltsville, MD, USA; ICMP: International Collection of Microorganisms from Plants, Landcare Research, Auckland, New Zealand; ZJUD, Diaporthe strains in Zhejiang University, China. Ex-type and ex-epitype cultures are indicated in bold.
  2. 2 ITS: internal transcribed spacers 1 and 2 together with 5.8S nrDNA; tub2: partial beta-tubulin gene; his3: histone3; tef1: partial translation elongation factor 1-α gene; cal: partial calmodulin gene. Sequences generated in this study indicated in italics.