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Table 1 Output parameters of de novo assembly and mapping.

From: NGS barcode sequencing in taxonomy and diagnostics, an application in “Candida” pathogenic yeasts with a metagenomic perspective

   Mapping De novo assembling
   BTL BBM High sensitivity Low sensitivity
C. albicans CMC 1853 23,810 reads n° reads assembled 23,389 22,755 23,721 23,674
  n° reads not assembled 421 1,055 89 136
  Assembly duration 7.19 seconds 21.58 seconds 38 minutes-10 seconds 12 minutes-29 seconds
  CPU time 8.54 seconds 12.49 seconds 2h-11 minutes 41 minutes-15 seconds
  Contigs 1 1 119 219
C. albicans CMC 1856 53,497 reads n° reads assembled 52,270 51,599 52,187 53,022
  n° reads not assembled 1,227 1,898 1,310 475
  Assembly duration 11.47 seconds 33.06 seconds 47 minutes+34 seconds 10 minutes-46 seconds
  CPU time 13.37 seconds 17.31 seconds 2h-49 minutes 34 minutes-1 second
  Contigs 1 1 242 357
C. glabrata CMC 1837 19,762 reads n° reads assembled 18,883 18,257 19,454 19,334
  n° reads not assembled 879 1,505 308 428
  Assembly duration 5.10 seconds 21.01 seconds 26 minutes-10 seconds 10 minutes-8 seconds
  CPU time 6.68 seconds 10.52 seconds 1h-33 minutes 34 minutes-2 seconds
  Contigs 1 1 121 209
C. glabrata CMC 1934 49,337 reads n° reads assembled 47,611 46,352 48,897 48,479
  n° reads not assembled 1,726 2,985 440 858
  Assembly duration 10.48 seconds 34.93 seconds 1h-40 minutes 21 minutes-11 seconds
  CPU time 11.48 seconds 21.11 seconds 5h-20 minutes 1h-11 minutes
  Contigs 1 1 243 470
C. orthopsilosis CMC 1880 20,089 reads n° reads assembled 19,533 19,472 19,960 19,923
  n° reads not assembled 556 617 129 166
  Assembly duration 7.69 seconds 27.36 seconds 34 minutes-27 seconds 11 minutes-5 seconds
  CPU time 10.98 seconds 22.71 seconds 1h-58 minutes 37 minutes-37 seconds
  Contigs 1 1 119 236
C. orthopsilosis CMC 2011 36,955 reads n° reads assembled 36,136 36,019 36,720 36,591
  n° reads not assembled 819 936 235 364
  Assembly duration 11.45 seconds 38.25 seconds 59 minutes-5 seconds 15 minutes-47 seconds
  CPU time 7.91 seconds 14.50 seconds 3h-20 minutes 51 minutes-58 seconds
  Contigs 1 1 219 477
C. parapsilosis CMC 1838 37,683 reads n° reads assembled 36,717 36,584 37,683 37,432
  n° reads not assembled 966 1,099 1,264 251
  Assembly duration 12.19 seconds 27.66 seconds 44 minutes-3 seconds 15 minutes-11 seconds
  CPU time 17.55 seconds 29.27 seconds 2h-33 minutes 51 minutes-48 seconds
  Contigs 1 1 190 335
C. parapsilosis CMC 2039 23,817 reads n° reads assembled 21,549 21,502 22,569 22,336
  n° reads not assembled 2,268 2,315 1,248 1,481
  Assembly duration 7.24 seconds 19.88 seconds 41 minutes-34 seconds 32 minutes-57 seconds
  CPU time 5.73 seconds 11.48 seconds 2h-24 minutes 1h-1 minute
  Contigs 1 1 281 632
C. tropicalis CMC 2003 44,744 reads n° reads assembled 41,841 41,361 43,253 44,140
  n° reads not assembled 2,903 3,383 1,491 604
  Assembly duration 12.23 seconds 31.09 seconds 43 minutes-4 seconds 15 minutes-9 seconds
  CPU time 9.70 seconds 14.13 seconds 2h-28 minutes 45 minutes-59 seconds
C. tropicalis CMC 2017 20,125 reads n° reads assembled 18,007 17,593 19,671 19,550
  n° reads not assembled 2,118 2,532 454 575
  Assembly duration 6.07 seconds 22.98 seconds 33 minutes-32 seconds 11 minutes-47 seconds
  CPU time 5.45 seconds 8.12 seconds 1h-56 minutes 39 minutes-35 seconds
  Contigs 1 1 369 527
M. guilliermondii CMC 1825 40,659 reads n° reads assembled 36,085 35,598 40,094 39,914
  n° reads not assembled 4,574 5,061 565 745
  Assembly duration 12.25 seconds 27.05 seconds 51 minutes-46 seconds 19 minutes-55 seconds
  CPU time 15.88 seconds 15.43 seconds 2h-58 minutes 1h-5 minutes
  Contigs 1 1 507 711
M. guilliermondii CMC 1924 19,388 reads n° reads assembled 17,593 17,335 19,195 19,152
  n° reads not assembled 1,795 2,053 193 236
  Assembly duration 6.33 seconds 19.18 seconds 22 minutes-39 seconds 9 minutes-18 seconds
  CPU time 7.02 seconds 9.02 seconds 1h-20 minutes 31 minutes-10 seconds
  Contigs 1 1 129 248