Mapping | De novo assembling | ||||
---|---|---|---|---|---|
BTL | BBM | High sensitivity | Low sensitivity | ||
C. albicans CMC 1853 23,810 reads | n° reads assembled | 23,389 | 22,755 | 23,721 | 23,674 |
n° reads not assembled | 421 | 1,055 | 89 | 136 | |
Assembly duration | 7.19 seconds | 21.58 seconds | 38 minutes-10 seconds | 12 minutes-29 seconds | |
CPU time | 8.54 seconds | 12.49 seconds | 2h-11 minutes | 41 minutes-15 seconds | |
Contigs | 1 | 1 | 119 | 219 | |
C. albicans CMC 1856 53,497 reads | n° reads assembled | 52,270 | 51,599 | 52,187 | 53,022 |
n° reads not assembled | 1,227 | 1,898 | 1,310 | 475 | |
Assembly duration | 11.47 seconds | 33.06 seconds | 47 minutes+34 seconds | 10 minutes-46 seconds | |
CPU time | 13.37 seconds | 17.31 seconds | 2h-49 minutes | 34 minutes-1 second | |
Contigs | 1 | 1 | 242 | 357 | |
C. glabrata CMC 1837 19,762 reads | n° reads assembled | 18,883 | 18,257 | 19,454 | 19,334 |
n° reads not assembled | 879 | 1,505 | 308 | 428 | |
Assembly duration | 5.10 seconds | 21.01 seconds | 26 minutes-10 seconds | 10 minutes-8 seconds | |
CPU time | 6.68 seconds | 10.52 seconds | 1h-33 minutes | 34 minutes-2 seconds | |
Contigs | 1 | 1 | 121 | 209 | |
C. glabrata CMC 1934 49,337 reads | n° reads assembled | 47,611 | 46,352 | 48,897 | 48,479 |
n° reads not assembled | 1,726 | 2,985 | 440 | 858 | |
Assembly duration | 10.48 seconds | 34.93 seconds | 1h-40 minutes | 21 minutes-11 seconds | |
CPU time | 11.48 seconds | 21.11 seconds | 5h-20 minutes | 1h-11 minutes | |
Contigs | 1 | 1 | 243 | 470 | |
C. orthopsilosis CMC 1880 20,089 reads | n° reads assembled | 19,533 | 19,472 | 19,960 | 19,923 |
n° reads not assembled | 556 | 617 | 129 | 166 | |
Assembly duration | 7.69 seconds | 27.36 seconds | 34 minutes-27 seconds | 11 minutes-5 seconds | |
CPU time | 10.98 seconds | 22.71 seconds | 1h-58 minutes | 37 minutes-37 seconds | |
Contigs | 1 | 1 | 119 | 236 | |
C. orthopsilosis CMC 2011 36,955 reads | n° reads assembled | 36,136 | 36,019 | 36,720 | 36,591 |
n° reads not assembled | 819 | 936 | 235 | 364 | |
Assembly duration | 11.45 seconds | 38.25 seconds | 59 minutes-5 seconds | 15 minutes-47 seconds | |
CPU time | 7.91 seconds | 14.50 seconds | 3h-20 minutes | 51 minutes-58 seconds | |
Contigs | 1 | 1 | 219 | 477 | |
C. parapsilosis CMC 1838 37,683 reads | n° reads assembled | 36,717 | 36,584 | 37,683 | 37,432 |
n° reads not assembled | 966 | 1,099 | 1,264 | 251 | |
Assembly duration | 12.19 seconds | 27.66 seconds | 44 minutes-3 seconds | 15 minutes-11 seconds | |
CPU time | 17.55 seconds | 29.27 seconds | 2h-33 minutes | 51 minutes-48 seconds | |
Contigs | 1 | 1 | 190 | 335 | |
C. parapsilosis CMC 2039 23,817 reads | n° reads assembled | 21,549 | 21,502 | 22,569 | 22,336 |
n° reads not assembled | 2,268 | 2,315 | 1,248 | 1,481 | |
Assembly duration | 7.24 seconds | 19.88 seconds | 41 minutes-34 seconds | 32 minutes-57 seconds | |
CPU time | 5.73 seconds | 11.48 seconds | 2h-24 minutes | 1h-1 minute | |
Contigs | 1 | 1 | 281 | 632 | |
C. tropicalis CMC 2003 44,744 reads | n° reads assembled | 41,841 | 41,361 | 43,253 | 44,140 |
n° reads not assembled | 2,903 | 3,383 | 1,491 | 604 | |
Assembly duration | 12.23 seconds | 31.09 seconds | 43 minutes-4 seconds | 15 minutes-9 seconds | |
CPU time | 9.70 seconds | 14.13 seconds | 2h-28 minutes | 45 minutes-59 seconds | |
C. tropicalis CMC 2017 20,125 reads | n° reads assembled | 18,007 | 17,593 | 19,671 | 19,550 |
n° reads not assembled | 2,118 | 2,532 | 454 | 575 | |
Assembly duration | 6.07 seconds | 22.98 seconds | 33 minutes-32 seconds | 11 minutes-47 seconds | |
CPU time | 5.45 seconds | 8.12 seconds | 1h-56 minutes | 39 minutes-35 seconds | |
Contigs | 1 | 1 | 369 | 527 | |
M. guilliermondii CMC 1825 40,659 reads | n° reads assembled | 36,085 | 35,598 | 40,094 | 39,914 |
n° reads not assembled | 4,574 | 5,061 | 565 | 745 | |
Assembly duration | 12.25 seconds | 27.05 seconds | 51 minutes-46 seconds | 19 minutes-55 seconds | |
CPU time | 15.88 seconds | 15.43 seconds | 2h-58 minutes | 1h-5 minutes | |
Contigs | 1 | 1 | 507 | 711 | |
M. guilliermondii CMC 1924 19,388 reads | n° reads assembled | 17,593 | 17,335 | 19,195 | 19,152 |
n° reads not assembled | 1,795 | 2,053 | 193 | 236 | |
Assembly duration | 6.33 seconds | 19.18 seconds | 22 minutes-39 seconds | 9 minutes-18 seconds | |
CPU time | 7.02 seconds | 9.02 seconds | 1h-20 minutes | 31 minutes-10 seconds | |
Contigs | 1 | 1 | 129 | 248 |