Homology and phylogenomic relationships of Botryosphaeria dothidea and B. kuwatsukai. A. Predicted proteins in B. dothidea and B. kuwatsukai were compared with the genome encoding proteins of other 12 species shown in phylogenetic tree. B. A maximum likelihood phylogenetic tree was constructed from concatenated alignment of 748 single-copy orthologs conserved across all species using RAxML with the best-fit model of LG+I+G+F.