From: Novel primers improve species delimitation in Cercospora
Locus/Loci | ITS | tef1 | actA | cmdA | his3 | tub2 | rpb2 | gapdh | All 8 loci |
---|---|---|---|---|---|---|---|---|---|
C. althaeina | 1 | 0.91 | 0.79 | 1 | 0.97 | 0.7 | 1 | ||
C. apii | 1 | 1 | |||||||
C. armoraciae | 0.73 | 1 | 0.98 | 1 | ? | 1 | 1 | ||
C. beticola | 1 | 1 | 1 | ||||||
C. bizzozeriana | 0.96 | 1 | 0.98 | 1 | 1 | 1 | 1 | ||
C. chenopodii | 0.99 | 1 | 1 | 0.95 | 1 | 1 | 1 | 1 | 1 |
C. convolvulicola | 1 | 0.99 | 1 | 1 | |||||
C. conyzae-canadensis | 0.96 | 1 | 0.92 | 1 | 1 | 1 | 0.57 | 1 | |
C. cylindracea | 1 | 0.9 | 0.99 | 0.98 | 0.97 | 0.75 | 1 | ||
C. cf. flagellaris clade 1 | 1 | 1 | |||||||
C. cf. flagellaris clade 2 | 1 | 1 | |||||||
C. cf. flagellaris clade 3 | 1 | 1 | |||||||
C. gamsiana | 1 | 1 | 1 | ||||||
C. cf. gossypii | 1 | 1 | |||||||
C. iranica | 1 | 0.94 | 1 | 1 | 0.98 | 1 | 0.91 | 1 | |
C. plantaginis | 1 | 1 | |||||||
C. pseudochenopodii | 1 | 1 | 0.95 | 1 | 0.99 | 1 | 1 | 1 | |
C. cf. richardiicola | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
C. rumicis | 0.99 | 1 | 1 | 1 | 1 | ||||
C. solani | 1 | 0.99 | 0.93 | 0.83 | 1 | 1 | 1 | 1 | 1 |
C. sorghicola | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Cercospora sp. G clade 1 | 0.98 | 1 | 0.86 | 1 | 1 | 1 | 1 | ||
Cercospora sp. G clade 2 | 0.98 | 1 | 0.86 | 1 | 1 | 1 | 1 | ||
Cercospora sp. T | 1 | 0.94 | 1 | 1 | 1 | 1 | 0.91 | 1 | |
C. uwebrauniana | 1 | 0.76 | 0.99 | 1 | 1 | ||||
C. violae | 0.97 | 1 | 0.93 | 0.94 | 1 | 1 | 1 | ||
C. zebrina | 0.73 | 0.87 | 0.84 | 1 | 0.75 | 1 | |||
C. cf. zinniae | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
K2P inter-/intraspecies variation ratio | 4 | 127 | 15 | 76 | 13 | 71 | 74 | 44 | |
Number of distinct species | 3 | 11 | 12 | 9 | 13 | 12 | 9 | 17 | |
Number of two indistinct species | 0 | 8 | 2 | ||||||
Number of unresolved species | 25 | 9 | 14 | 11 | 9 | 12 | 10 | 0 |