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Fig. 2 | IMA Fungus

Fig. 2

From: Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans

Fig. 2

Maximum likelihood tree based on partial gene sequences of β-tubulin and translation elongation factor 1-α (Scauflaire et al. 2011, De Vos et al. 2014). Sequence alignments were assembled with MAFFT version 7 (Katoh & Standley 2013). The program jModelTest v 2.1.7 (Guindon & Gascuel 2003, Darribo et al. 2012) was used to determine the best-fit substitution model (TIM2+I+G substitution model) with gamma correction (Tavare 1986). A maximum likelihood (ML) phylogenetic analysis was performed using PhyML v 3.1 (Guindon et al. 2010). Values at branch nodes are the bootstrapping confidence values with those ≥ 85 % shown. The F. circinatum FSP34 isolate used in this study is indicated in bold.

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