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Notable historical databases of fungal names
IMA Fungus volume 7, pagesA28–A41(2016)
Present-day electronic databases of fungal names are 21st century versions of previous compilations for the same purpose. The comprehensive indices attached to books by Persoon and Fries summarized names known at those times. Later compilations appeared piecemeal in journals or free-standing, always improving but hardly available for “rapid retrieval.” Twentieth century Index of Fungi required tedious data entry from thousands of journals over many years, but the result could later be inserted into electronically retrievable computer programs. Index Fungorum includes data harvested from Index of Fungi, but perhaps its major source has been Saccardo’s Sylloge Fungorum, probably the most prodigious compilation of the 19th–20th century. Names for lichen-forming fungi were gleaned from the catalogues of Zahlbruckner and Lamb. The role of the Commonwealth Mycological Institute, its predecessors and its successors, has been significant.
Among the several definitions of the term “database,” two parameters seem almost universal: data must be arranged for rapid retrieval and the instrument for retrieval is the computer. While “computer” is open to only limited interpretation, “rapid” is certainly a relative term. “Rapid retrieval” two centuries ago might be currently judged intolerably slow. Nonetheless, using nothing more than mental acuity, penmanship and type-setting prowess, cumbersome mycological data has been presented for “rapid retrieval” for nearly two centuries. The intent of this paper is to outline some of the important sources of organized mycological data on fungal names over the years leading to our current state.
For the purposes of this paper, such compilations (including databases) are attempts to synthesize or distill previous data (i.e. monographs, checklists, etc.) in order to bring together concise data (whether fungal names, protologues, host records or literature citations), but only the first constitutes a “database” of fungal names. In this way, for example, Fries’s Systema Mycologicum is not a database of fungal names, but the Index Alphabeticus following volume III is such. In the same way, Index Fungorum is a database, but with links to Species Fungorum, which includes heterotypic synonymy and suggestion of a “current name.”
Even the “founding fathers” of mycological taxonomy had access to and studied previous floristic studies which included names for fungi. To be sure, written descriptions in several prior works on fungi were less than fastidious (by modern standards), but some of the more influential works were well-illustrated. Petersen (1976a, 1977a, b, c, 1983a, b, c) dissected some of these works, drawing attention to how such authors as Schaeffer, Bolton, Bulliard, Sowerby and Fries simply substituted their own preferred species epithets for prior names. The result was a body of names with checkered histories available to the “founding fathers,” who, together with attempting to submit fungi to philosophical systems, sorted the taxa for acceptable names. It was the first peristalsis of names since the introduction of Linnaean binomial nomenclature. It would not be the last.
The Synopsis Methodica Fungorum by Christian Hendrik Persoon (1801) was a summary of a taxonomic scheme used to gather descriptions (and a few illustrations) of all fungi known to Persoon. As such, it did not constitute a “database” but in reality was a philosophical treatise with fungi as examples. The Index Botanicus sistens omnes fungorum species in D.C.H. Persoonii Synopsi Methodica Fungorum … dated 1808 (but bound in with the reprint edition of the Synopsis; Johnson Reprint Corporation, 1952), acted as an early database to fungal names treated by Persoon. Taken together, they constituted the first such comprehensive offering dealing with fungal names since the time of Linnaeus (1753) (Jarvis 2007).
The proliferation of plant names, including cryptogams (which included fungi), was growing apace. In Germany, Christian Gottfried Daniel Nees von Esenbeck (1776–1858) gained respect as a philosophical and academic botanist. As he used Persoon’s Synopsis, he ventured his own system of arrangement and logic on the fungi, and in 1816–1817 published Das System der Pilze und Schwämme (Nees von Esenbeck 1816–1817). It appeared concurrently with Fries’s Observationes Mycologici part I, but was far more comprehensive. Deeply steeped in Romantic philosophy, Nees von Esenbeck’s volume was soon a cornerstone, with significant influence on Fries and others over many years.
When still rather young, Elias Magnus Fries began writing summaries of the fungi he found in Småland in southern Sweden (Petersen 1996, Petersen & Knudsen 2015). First came two editions of Observationes Mycologicae (1815, 1818) and during the in-press time for the second part, the first draft of Systema Mycologicum part 1 was begun. As with Persoon, Fries’ Observationes was intended to summarize taxa. But in his autobiography, Fries wrote “Having learnt by experience that Persoon’s system is not sufficient, I began in 1816 to produce another, and to subject all species to an entirely new investigation” (Fries & Fries 1955). The Systema was intended to overhaul Persoon’s “Methodicus” and to substitute his own (Fries’) “Systema”. Again, it was a taxonomic treatise embedded in a philosophical scheme. But Vol. 1 of the Systema included so many names that Fries appended an index, thus offering a “database” of hymenomycete names.
A friend of Nees von Esenbeck, Ernst Gottlieb Steudel (1783–1856), a physician and botanist, was struck by the plethora of plant names. Perhaps influenced by Nees von Esenbeck, Steudel gathered a compendium of plant names, published in 1824 as Nomenclator Botanicus (Steudel 1821, 1824). Accepted names and synonyms were included (distinguished by type point), and fungi were included: part I (Steudel 1821) did not include cryptogams, but part II (Steudel 1824) did so (covering all fungi, including lichen-formers). Prominently mentioned in his introduction were Fries’ Systema and Persoon’s Mycologia Europeae (of which only volume I had then been published; Persoon, 1822). Names from Fries were cited arcanely under the appropriate genus, followed by the tribe number and the species number in Systema I.
In the culmination of Systema Mycologicum (vol. 3, 1832), a dense, five-part summary of fungi as Elias Magnus Fries knew them, Fries felt constrained to append an inclusive index of the fungal names included throughout the volumes. He even took pains to use Roman versus Italic type-faces to represent names he accepted and names he included either in synonymy or in discussion but did not directly adopt. While his motives (other than completeness) are no longer clear, “legislation” by the mycological community nearly a century later mandated inclusion of the Index Alphabeticus as part of the Systema and Elenchus and thus elevated Fries’s comprehensive index as a compilation of validly published names versus “devalidated” (a term used for some years when dealing with the “starting point” of non-lichen fungal nomenclature)1. Steudel’s volume appearing as it did during the years in which Fries’ Systema and Elenchus volumes were being published, eventually was recognized as a very early compendium of fungus names AFTER the nomenclatural starting point and it therefore took on added importance. More recent nomenclatural changes have diminished the implications of Steudel’s “database”. Parenthetically, Steudel’s (1840–1841) second edition of Nomenclator Botanicus did not include cryptogams.
Shortly after the turn of the 20th century, several mycological journals from Europe and United States were providing significant pagination for authors intent on describing: (1) taxa (a term not adopted until 1950) putatively new to science; (2) descriptions of life-histories of fungal pathogens, largely of plants, agricultural and/or horticultural; and (3) descriptions of the mycobiota of “exotic” regions, including Central and South America, Africa, Pacific landmasses and, to a lesser extent, Asia. As it had evolved for prior botanists (botany, of course, traditionally included mycology), the mycological literature of the day was becoming nationally and linguistically burdened with too many names, too many organisms, exacerbated by thousands of specimens arriving at famous botanical institutions, usually in western European national capitals, from the far corners of the world. National pride as well as biogeographical ignorance surely rendered redundant names for the same organisms. After all, specimens from Africa could come to Berlin, Brussels, Lisbon, London, Paris or Vienna, often from contiguous regions of the continent.
Consolidation and Compilation
How to create a handle with which mycological workers could more easily plumb the literature for simple data such as preoccupied names, sizes of genera and for authors whose experience had made them expert in some selected fungal group?
The lists of fungus names, even in the United States, were becoming inconvenient; already extant, but not readily available. Schweinitz’s (1822, and published in Leipzig, 1834); lists of American fungi (Berkeley & Curtis 1856); Lea’s (Berkeley 1847), Curtis’ (Berkeley & Curtis 1849a, b, c, d, 1853, 1859, Petersen 1980), and Ravenel’s specimens sent to Berkeley (Berkeley 1872a, b, c, 1873a–k, 1874a–d, 1875a–d, 1876a, b) and a few to Montagne (1856); Hitchcock’s (1829) list from Amherst, MA; Somers’ (1882, 1887, 1890, 1891) “Nova Scotia fungi,” Peck’s growing contribution (Vogelenzang 1980–1988), especially of fleshy fungi, were all accumulating over the years. Rogers (1981) mentions more. At the end of most numbers of the Journal of Mycology (commenced in 1885) there appeared an “Index of North American mycology,” combining fungus names (i.e. Colletotrichum), authors (i.e. Cobb, N.A.), geography (i.e. Colorado myxomycetes) and hosts (i.e. Cranberry, Crataegus). Certainly the most comprehensive compilation of fungus names during these years was Nomenclator Fungorum by Wenceslao Materno Streinz (1792–1876; Streinz 1862). While Streinz may have imposed some taxonomic judgements (Ainsworth 19762), his coverage was thorough. Around the same time, Louis (Ludwig) K.G. Pfeiffer (1805–1877) prepared his massive 1698-page Nomenclator Botanicus of names above the rank of species of all “botanical” groups published up to the end of 1858 (Pfeiffer 1873–74); this work is not often cited by mycologists but includes, amongst other things, usages of generic names and indications of type species. While useful, these indices are difficult to search and especially to ferret out the literature in original form, as citations are often cryptic. Meanwhile, amateur mycological clubs were generating data on local fungi3, mostly discounted by the professional mycological community.
Given the emphasis on “Hymeomycetes” by Persoon and Fries, it is interesting that an early fungal “database” came from the United States (Harvard), dealt with parasitic fungi, and was derivative, arranged by plant hosts rather than by fungal names (Farlow & Seymour 1888, 1890, 1891; Fig. 1). William Gilson Farlow (1844–1919; Fig. 2) recognized several problems: (1) fungal taxa could be found on more than one host (considering the sophistication of fungal identification of that day); (2) fungal taxa were being named based on their hosts and even by the particular plant organs on which they were found; (3) little was known about the taxonomic or geographic breadth of pathogenic fungi; and (4) the number of fungus names was increasing too rapidly. Farlow (Farlow & Seymour 1891) wrote: “… believing that an approximately complete list of our parasitic species and their hosts would aid materially in the advance toward a more accurate study of our mycological flora and would tend to lessen the amount of indiscriminate species making which has already become a serious evil, the present index, the result of work extending over several years, has been prepared for publication.”
By the time the “Host Index” was published, the Journal of Mycology was already three years old. Volume 1 (1885) was edited by William Ashbrook Kellerman (1850–1908; Fig. 3), assisted by J.B. Ellis4 and B.M. Everhart, and emanated from Manhattan, Kansas, not exactly the hub of science in 19th century United States. Almost immediately, the journal took on an agricultural cast — plant pathogenic fungi, diseases caused by fungi, etc. Starting with volume 4, this tendency was recognized formally by shifting publication to the Department of Agriculture. Volumes 5–7 were unabashedly agricultural, and Kellerman (by then at Ohio State University) took the journal back starting with volume 8 (Fig. 4). Kellerman wrote: “The journal was at first published most exclusively in the interest of systematic or taxonomic mycology”. While practical papers were still solicited, the journal again sought to become “an index” for all new species of fungi from the US. Many amateurs and professionals had dropped subscriptions to the journal because its direction had changed, and Kellerman invited them back.
The Journal of Mycology, though, was almost uniquely American (after all, the organizers and editors were American and the audience was almost totally so), and while Europeans had some publication outlets (i.e. Flora, Grevillea, Bulletin de la Societé Royale de Botanique Belgique, Hedwigia, Bulletin de la Societé Botanique de France, Engler’s Botanisches Jahrbuch), most catered to linguistically narrow audiences and authors and most were inclusive of wide botanical subjects (at least cryptogams), with mycology only a minor stepchild (with the exception of Revue Mycologique, exclusively French, and started in 1879). Bulletin de la Societé Mycologique de France (from 1885), Journal of Mycology (also from 1885) and Transactions of the British Mycological Society (from 1895) joined somewhat later. Kellerman had received his PhD in Zürich, so was familiar with German but most other Americans were linguistically challenged. The situation in reverse was no better in Europe.
In 1876, confronted with pyrenomycete literature in a dozen languages often unfamiliar to workers with limited linguistic breadth, Pier Andrea Saccardo (1845–1920; Fig. 5) of Padua, Italy, began a compilation of pyrenomycete generic names reported from Italy, their literature sources, their geographic origins and, most important, their descriptions rendered in a single language, Latin (Saccardo 1875). The result, he hoped, was to make these data available to anyone with cursory experience in the “universal language”. Whether Saccardo was cognizant of America’s insularity cannot be known, but even American workers were usually exposed to a year or two of Latin in grade school. Mycological taxonomic literature continued to grow and Saccardo published a series of lists of fungi from various European countries or regions. By 1882, Saccardo again saw a need to summarize pyrenomycete names and literature, this time under the title Sylloge Fungorum (Saccardo 1882). Saccardo’s second volume (Saccardo 1883) under the new title was intended to be the last, but unanticipated, Saccardo’s effort (and over the years with other collaborators) produced 25 monumental volumes of Sylloge Fungorum, finally ending posthumously in 19315, 6.
Searching for a Needle in a Haystack
But how to find a particular fungus (assumedly a pyrenomycete) in such a stupendous compendium? Saccardo was obliged to adopt a system of classification. The principles of the system (see Kellerman 1907) were laid out in the preface to Volume 1 and by the end of the 19th century, Saccardo’s classification system was in place for all known fungal groups (Anon. 1898, Reed & Farr 1993). Especially fortified with keys — in Latin, of course — all workers were provided with a taxonomic scaffold upon which to match an unidentified fungus to those in Sylloge. Even so, availability of Sylloge was not universal (down-loaded on-line scans were well over a century away), so many workers continued to struggle. Cooke (1884–1890) summarized the pyrenomycetes as he knew them. Job Bicknell Ellis (1829–1905; Fig. 6) and Benjamin Matlack Everhart (1818–1904) were self-taught and picked their way through three preceding systems7. Nonetheless, they were able to amass their early monographic tome, North American Pyrenomycetes (Ellis & Everhart 1892; Fig. 7), which not only transmitted all that was known about the fungus group north of Mexico, but in retrospect must be regarded as typical of the fungal groups which were being most carefully examined at the turn of the 20th century. Ellis, while receiving specimens from widely scattered locations, centered his research around Newfield, New Jersey, his home, and Everhart, who mined prodigious collections from eastern Pennsylvania, did not travel outside the US. While keys to genera were included in the text, in my copy of North American Pyrenomycetes is added “Analytic key to the suborders, families and genera of the North American Pyrenomycetes and Hysteriaceae” by an anonymous author. With full descriptions and 39 composite plates, this work is still the only attempt to cover all North American non-lichenized pyrenomycete fungi available today.
In the greater scheme of things, Curtis Gates Lloyd (1859–1926) was not a major character and surely did not intend to be a compiler in the sense of this paper. In fact, his only first-hand compilations were the indices at the ends of most of his writings, which extended from 1898 through 1925. Comprehensive compilations based on his publications came some years later (Stevenson & Cash 1936, Stevenson 1933, Anon. undated), and so do not form an integral part of the “turn-of-the-20th-century” chronology. Nonetheless, Lloyd was not only an eccentric man and wealthy enough to travel widely and to publish his own research, including caustic and sometimes injurious musings on the work of others, but through correspondence and personal interactions he was often the only American “mycologist” known firsthand by international professionals and, therefore, had influence on taxonomic mycology.
By the turn of the 20th century, Moses Ashley Curtis (1808–1872) and Miles Joseph Berkeley (1803–1889) were dead. Mordecai Cubitt Cooke (1825–1914) emerged as the most prolific British mycologist. B.M. Everhart (1818–1904) was in his final years, as was his partner, J.B. Ellis (1829–1905).
Farlow (1844–1919), Peck (1843–1917) and Saccardo (1845–1920) were in their prime. From Germany, however, a new father and son team, Paul (father, 1851–1925; Fig. 8) and Hans (son, 1879–1946; Fig. 9) Sydow, endeavored to start a new mycological journal. Although, by now, some mycological journals already existed (i.e. Bulletin de la Societé Mycologique de France), none were German or Germanic. Hans Sydow was careful to invoke the names of reputable mycologists as “cooperators”8, and in 1903, launched Annales Mycologici. Immediately, it served as an outlet for a few authors, most of whom also appeared on the list of “cooperators”. While the journal itself could not be considered a compilation (but always with extensive indices), it persisted continually until the concluding days of World War II. By the time Annales Mycologici first appeared, Saccardo was gathering data for Volume 17 of Sylloge Fungorum. Once Hans Sydow founded Annales Mycologici, “H. and P. Sydow” became dominant coauthors for several years, but in 1921, Paul’s name disappeared, with Hans continuing to publish without his father.
Paul Sydow was a professional biologist. His early publications were on mosses, but by middle age, he had shifted his attentions to fungi, especially Uredinales (rust fungi) and Ustilaginales (smut fungi). In the 1880s, he amassed and distributed a huge exsiccati of these fungi, of which copies may be found all over the western world.
By 1908, Paul Sydow established a relationship with Gustav Lindau (Fig. 10) which resulted in their compilation, Thesaurus Litteraturae Mycologicae et Lichenologicae (Lindau & Sydow 1908–1917). Gustav Lindau was already an influential and widely published German lichenologist/botanist by the time he partnered with Sydow. He had contributed significantly to Engler & Prantl’s Die Natürlichen Pflanzenfamilien (several groups of ascomycetes and deuteromycetes), he had coordinated organization and publication of Kryptogamenflora der Mark Brandenburg, had written three editions of Hilfsbuch für das Sammeln und Präparieren die niederen Kryptogamen and two volumes of Die Pilze Deutchlands. In all cases, his research was taxon-based.
Two chief justifications were furnished to demonstrate the need for this new Thesaurus focusing on mycological, and including lichenological literature. First, citations of the collected works of various authors were unavailable. Examples given were Saccardo, Traverso, Farlow, McAlpine, v. Krempelhuber, Pissarschewsky, etc. Second, previous bibliographic compendia were inadequate, either because they were obsolete: Dryander’s Bibliotheca Banksiana (Dryander 1798–1800); v. Miltitz’ Handbuch9 (Miltitz 1829) or because they were too broad in content: Catalog of Scientific Papers10 (Royal Society 1869–1921); Pritzel’s Thesaurus11 (Pritzel 1872); Richter’s Codex (Richter 1840); Just’s Jahresbericht12 (Just, 1873–1922)]. The new Thesaurus authors set out their aims (transl.):
“We hope to give, through these designed advances, just as one previously could hardly find a scientific discipline in the general totality, we ourselves are nevertheless aware that spaces are still empty and that the nominally readily attainable periodicals or wholly inaccessible literature from other lands must furthermore be provided. We strive, if possible, to fill out these spaces too, but if we should not succeed from any direction, may we be granted good will, and receive at least a fair assessment”.
The first two volumes listed citations by author to 1906. Volume three listed literature from 1907–1910, and the final two volumes recapitulated the literature of the previous volumes, this time divided into subject areas. Thus, Thesaurus Literaturae brought the mycological literature bibliography up to 1910, although volume five was published in 1917. Just at that time, World War I was at its height, with the United States newly enlisted on the side of Britain and France. Although not directly concerned with fungus names, the Thesaurus bridged the hiatus between Saccardo’s Sylloge’s abbreviated literature citations and the primary literature itself. It was useful throughout the mycological community, and the original edition sold out. Subsequently, the Johnson Reprint Company published a facsimile, which helped circulation.
Rafaele Ciferri (1897–1964), of Pavia, Italy, revived the Thesaurus Literaturae in 1957 (Ciferri 1957–1960), even appending Lindau and Sydow’s names to the title page, in volumes purporting to be supplements of literature from 1911–1930. Ciferri was a prolific author in plant pathology with early papers in the 1920s, but continuing to publish for a half-century. By 1957, the economic situation in Italy had improved from the depths of World War II. A new form of reproduction was available, and the revived Thesaurus was a duplication of typescript on somewhat inferior paper. To cover the mycological (including lichenological) literature from 1911–1930, four thick volumes were filled, the last published in 1960.
If Lindau and Sydow’s Thesaurus was author-based, Saccardo’s Sylloge was taxon-based. In 1920, the mycological community mourned Saccardo’s passing. Subsequent volumes of Sylloge Fungorum were entitled “Supplementum Universale,” and were edited by a small group of collaborators of Saccardo. Publication ceased in 1931. A “Volume 26” was edited by Cash in 1972 (see Saccardo in biblioghraphy) and all volumes were indexed by Reed & Farr (1993). The posthumous volumes compiled by Cornelis Antonie Jan Abraham Oudemans (1825–1906) arranged the fungi by their plant associates13
The relative opacity of Saccardo’s classification system due to its presentation in Latin impeded its adoption in the United States. Frederic Edward Clements (1871–1945; Fig. 11)14 then a teacher at the University of Minnesota, translated the keys in Saccardo’s first eight volumes (1882– 1889) into English and reproduced them for classes in mycology. “It immediately proved so convenient and usable that the preparation of a complete guide to the fungi was begun the same year”. The product of the effort was published (Clements 1909) in 1909, as The Genera of Fungi (Fig. 12). Clements was able to cite Saccardo’s Sylloge through vol. 18 (1906), but used only the keys from the earlier volumes.
The translation, understandably, was dominated by keys, largely translated from Saccardo’s Latin but here and there revised by Clements, based on what he considered better literature. It was other chapters, however, which qualify the book as a compilation: Index of families in Saccardo’s “Sylloge Fungorum” and Rehm’s “Discomycetes” list of new genera and types; index to genera, subfamilies, families and orders. The latter provided the reader with a “database” of generic and suprageneric names. What was not appreciated until much later was the listing of a type species for every genus, whether supplied by Clements himself or a previous author (including the author of the taxon).15
Years later, once retired, Clements partnered with Cornelius Lott Shear (1865–1956)16 at the Bureau of Plant Industry (US Department of Agriculture, Beltsville, MD) to produce a revised volume (Clements & Shear 1931). In it, more than 5000 generic names were reviewed, keys were significantly revised and genera were not only typified but illustrated as well. The volume (reprinted in 1954) presented a comprehensive “database” of fungal generic names.
An improbable man stepped in to carry on the tradition. Franz Petrak (1886–1973; Fig. 13) was an ascetic man and during his early years often subsisted on potatoes and vegetables which he grew. In later years he was variously described as painfully thin or gaunt. His diet may have contributed to later gastric symptoms. Petrak was born in rural Austria, but after preliminary schooling, moved to Vienna and earned a doctoral degree under Richard von Wettstein. In 1910, Petrak obtained the mycological herbarium of C.A. Eichler, plus a few volumes of Rabenhorst’s Kryptogamenflora, both of which introduced Petrak to fungi. Soon, he was totally involved in mycological research, and published his first paper in Annales Mycologici in 1914. In the Austrian army during World War I, Petrak collected fungi in Galicia, Bosnia, Albania and Macedonia (the Balkans). Upon his return home after the War, he resumed his research, and soon began a series of contributions to Just’s Botanischer Jahresbericht compiling all new names and literature sources of fungi. The series summarized this information for names from 1920–1939, and was published through 194417. The series came to be called “Petrak’s Lists” (Samuels 1981, 1982, 1983, 1986).
His close and protracted relationship with Hans Sydow provided Petrak with an organ (Annales Mycologici) in which to publish his research results, often in multiple papers per number. Through this relationship Petrak received numerous exsiccati, and may have named his only son, Hans, after his professional friend.
During World War II and afterward (1938–1951), Petrak served as a “contract worker” at his alma mater, the Naturhistorische Museum Wien, in a position far lower than his intelligence and experience. He oversaw the removal of the library and herbarium to safe places during World War II, and their return (completed in 1958). In 1950–1951, under a fellowship from the American Philosophical Society, Petrak spent the year at Beltsville, USA, identifying many specimens.
Concurrent with compilation of “Petrak’s Lists”, Petrak also edited Sydowia, the continuation of Annales Mycologici after WW II. It is said that one of the reasons for editing Sydowia was to provide himself with an outlet for publications, especially since Petrak was one of the last to persist with hand-written manuscripts.
Influenced by Saccardo, Austrian lichenologist Alexander Zahbruckner (1860–1938) embarked on a Catalogus Lichenum Universalis, which appeared in 10 volumes over the years 1921–1940 (Zahlbruckner 1921–1940). This was taxonomic, listing names under accepted species, and unlike the Sylloge aimed to cite all published uses of the names. The indexing of names of lichen fungi published from 1932–60, was continued by Ivan Mackenzie Lamb (1911–1990; later Elke Mackenzie), arranged alphabetically, not taxonomically, as Index Nominum Lichenum (Lamb 1963). William Louis Culberson (1929–2003), who produced a 100-part series, “Recent Literature on Lichens” in The Bryologist from 1952–78, planned a continuation of Lamb’s Index, but he was unable to complete this and passed his data to CMI for completion and editing; this was published as a supplement to the Index of Fungi in 1972.
An unfortunate consequence of the different catalogues for lichenized fungi, as opposed to fungi with other biologies, was that many lichenicolous fungi, and some with uncertain biologies, were overlooked; Saccardo often missed these fungi when in primarily lichen works, and Zahlbruckner and Lamb did not list them as they were not lichen-formers.
In the same year that Petrak began “Petrak’s List”, 1920, the Imperial Bureau of Mycology (IBM) was established on Kew Green, adjacent to but separate from the Royal Botanic Gardens, as a centre for gathering mycological information for the British Empire (Aitchison & Hawksworth 1993). In 1930, it became part of the Imperial Agricultural Bureaux (which had been established in 1927) and was renamed the Imperial Mycological Institute (IMI). IMI provided an identification service for pathogenic fungi from 1921 onward, and in 1922 started publishing abstracts of research literature in the Review of Applied Mycology (RAM). RAM was not a compilation of mycological names, but a listing of pertinent mycological literature. It was “Petrak’s lists” which maintained the thread of the Sylloge Fungorum from 1920–1939.
The series called Supplement to Review of Applied Mycology, commenced in 1940 by IMI18, but after Supplement 15 (1948) changed its name to Index of Fungi (http://www.cabi.org/publishing-products/online-information-resources/index-of-fungi/), issued in two parts per year, covering new fungal names (also those of lichen fungi from 1970), initially at the ranks of genus, species and below and including both a host index and a cumulative index for every volume of 20 parts. The Bibliography of Systematic Mycology commenced in 1947, essentially carrying forward Ciferri’s Thesaurus. Recognizing the change in character of the Empire in the wake of World War II, in 1948, the name of IMI was changed to the Commonwealth Mycological Institute (CMI)19, and in 1986, to CAB International Mycological Institute (following the change to international legal status of the parent body to CAB International, CABI), and in 1990, resurrected the simpler International Mycological Institute, IMI. In 1998, the four Institutes of CABI were reorganized into a slimmer CABI Biosciences, and the IMI no longer had a separate identity or Director. CABI, however, continues to produce both Index of Fungi and Bibliography of Systematic Mycology. The Institute also reproduced, as supplements to the Index of Fungi, Petrak’s Lists (Fig. 14) and A Supplement to Petrak’s Lists (Fig. 15)20. As a step toward a complete nomenclator of fungal names at all ranks, David (2002) prepared a preliminary catalogue of names of fungi above the rank of order.
Encumbered by the inefficient, laborious data-entry work of the times, at least two difficulties emerged as anticipated: (1) the number of “obsolete” names (i.e. moribund names, names for which no accurate identification was available, nomina herbaria, etc.) was unwieldy in all fungus groups, and required excessive effort to pin them down with the required nomenclatural details, particularly typification (the category of “epitype” was still in the future); and (2) The search for new published names in worldwide journals, often with limited subscription lists, geographical coverage and press runs, was already a growing problem requiring manpower and tedious harvest (and funds to support the effort). Around 12,000 journals were being regularly scanned by CABI for its abstracting journals and any with new fungal names were flagged and drawn to the attention of IMI staff. Some additional journals not at Kew or IMI were regularly scanned in the libraries of the Natural History Museum in central London.
As part of the post-World War-II reorganization of botanical taxonomy as a field of research, a proposal was made to compile a summary of generic names for plants (including fungi) and their type species. Such an index had been underway as a series of index cards, but now a more concerted effort was undertaken and over 35,000 cards were amassed. Eventually, funding for a full-blown project was obtained, and a team, led by Dr. Ellen Farr, toiled over a decade and produced Index Nominum Genericorum (“ING”), with over 63,500 generic names and their types, issued as volumes of Regnum Vegetabile (Farr et al. 1979).
Registration and Protection of Names
To alleviate the former problem in all groups of organisms covered by the botanical code of nomenclature, some 30 years ago David Hawksworth and colleagues, under the auspices of the International Union of Biological Sciences (IUBS), introduced the concept of protecting “names in current usage” over potentially competing earlier names. Through this effort, experts in various plant groups (and fungi) would be asked to compile lists of actively used names (thus removing from consideration the moribund names mentioned above), with the idea that these lists, once vetted by the nomenclature bureaucracy, would become an injected “starting point” for fungal (and plant) names. The idea was met by resistance by taxonomic “purists”, who took issue with the lists of people to be invited to compile suitable fungal name lists and the dismissal of historical names the “validity” of which, while often obscure, was historically correct. The “names in current usage” concept did not find sufficient traction in the botanical and mycological community and was rejected by the 1993 International Botanical Congress in Yokohama, despite an overall list of family names, generic names, and species lists for sample families having already been published (Greuter et al. 1993a, b, c). The unveiling of Index Fungorum (more below) abruptly revealed all manner of names, and “names in current usage” has evolved into the concept of lists of protected names, which was accepted at the Melbourne Congress in 2011.
Hawksworth and colleagues’ proposed renovation of name compilation also included “name registration”, which moved the responsibility for detecting and compiling lists of new names (all taxonomic ranks as well as new combinations, etc.) from the journal subscriber to the author of the taxon. This idea was not new in mycology, having been discussed at the Geneva Conference in 1954 (Regnum Vegetabile 5: 47–48) and formally proposed a year later (Ainsworth & Ciferri 1955). The concept was approved for all organisms covered by the botanical code at the Yokohama Congress of 1993, and incorporated into the Tokyo Code, to become obligatory after the next Congress. However, that Congress, in St Louis in 1999, voted against the scheme, which had been proposed for algae, fungi and plants, and the provisions were deleted from the Code. Several centres for name registration had ben envisioned to ease submission of names world-wide. Again, the idea was greeted with mixed opinions, but eventually was approved through the nomenclature hierarchy and incorporated into what was, and is still known today, as MycoBank, headquartered at CBS-KNAW Fungal Diversity Centre (CBS) in Utrecht, The Netherlands, but now owned by the International Mycological Association. Following support for the scheme at the 9th International Mycological Congress in Edinburgh in 2010, proposals to make registration part of the requirement for the valid publication of new fungal names was approved by the subsequent International Botanical Congress in Melbourne the following year, with effect from 1 January 2013. The Nomenclature Committee for Fungi was charged with approving one or more registration centres, subject to ratification at the next International Mycological Congress in Bangkok in 2014; MycoBank, Index Fungorum, and Fungal Names were approved and the decision ratified at the Bangkok Congress.
In the few templates completing the registration process, not only are names submitted, but also all elements required for the valid publication of names, including typification and diagnosis. Names are given a unique registration number (“identifiers”), and if journals accept a new name or combination without a registration centre designation, such unregistered names are now ruled as not validly published for nomenclatural purposes. The system takes advantage of the electronic age.
Index Fungorum (http://www.indexfungorum.org/) was initiated at IMI, with the co-operation of the US National Fungal Collection who generously made available the database used to produce the index to the Sylloge (Reed & Farr 1993). Generic and species names for lichen fungi were keyed in from the index volume of Zahlbruckner’s Catalogus by its last Director’s son, Julian L. Hawksworth. It went on to develop as a collaboration among CABI, CBS, and Landcare Research, New Zealand. This on-line database largely parallels Index of Fungi, which is print-and subscription-only. Index Fungorum acts as an umbrella over several subsidiary databases: taxon name-based (including Species Fungorum, which gives accepted names and synonyms, and provides the input for the now annual editions of the multi-disciplinary Catalogue of Life), author-based, bibliography-based, etc. This service is the latest to carry on the tradition of the great mycological compilations. While it is “state of the art” in the early 21st century, it stands on the shoulders of the great compilations (and compilers) of the past.
Although not directly in the line of databases nor names of fungi, mention must be made of Taxonomic Literature, second edition (“TL-2”), for within its pages is found exhaustive information about the workers who compiled such data. Its entries open doors into the lives and times of the workers mentioned here21.
It takes a particular personality and mentality to persist in compilatory work. For many years, printed compilations were the product of solitary workers (or small groups of collaborators, but centered in individuals) written in long-hand on paper. Today, a single database (i.e. MyCoPortal; http://mycoportal.org/portal/index.php) can canvas several other databases almost instantaneously. Individual compilers still continue to accumulate new information for databases (there is no escape from data entry) but mycological research is
flourishing due, in part, to the foundations laid by past and present compilers.
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Don Pfister made valuable suggestions to a prior draft of this paper. As usual, many years ago Marinus Anton Donk sowed the seed of the value of compilations in mycology. Modern databases, including those of leading botanical libraries (chiefly The New York Botanical Garden) have included accurate citations, and electronic compendia (i.e. JSTOR, Biodiversity Heritage Library, etc.) include many of the classical publications useful in this discussion.
MycoLens is a section in IMA Fungus introduced for historical or topical commentaries and observations of potential interest to a wide range of mycologists, but which fall outside the scope of other sections of the journal.
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Petersen, R.H., Hawksworth, D.L. Notable historical databases of fungal names. IMA Fungus 7, A28–A41 (2016) doi:10.1007/BF03449412
- name registration
- Index Fungorum