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Correction to: Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis‑grandicollis sp. nov

The Original Article was published on 01 September 2021

Correction to: IMA Fungus (2021) 12:24 https://doi.org/10.1186/s43008-021-00076-w

Following the publication of the original article (Trollip et al. 2021), we were notified that there was a missing column at the end of the first section of Table 3, which included the genome information for one of the genomes generated in this study (Ophiostoma angusticollis – Genome Accession JADHKL000000000).

  • Originally published table:

    Table 3 Genome summary statistics of representative ophiostomatoid isolates sequenced in this study

    Species Ceratocystiopsis Graphilbum Leptographium s. l
    Ceratocystiopsis sp. G. fragrans G. ipis-grandicollis sp. nov G. cf. rectangulosporium Gro. huntii Gro. radiaticola
    Taxon Taxon 1 Taxon 2 Taxon 3 Taxon 4 Taxon 5 Taxon 6
    Sequenced strain VPRI43766 VPRI43528 VPRI43762 VPRI43763 VPRI43530 VPRI43523
    GenBank Accession JADHKF010000000 JADHKG010000000 JADHKH010000000 JADHKI010000000 JADHKJ010000000 JADHKK010000000
    Total reads after QC 27,063,242 50,135,289 49,429,518 46,778,484 94,294,776 114,599,394
    Number of scaffolds 79 237 178 117 254 85
    Longest contig (Mb) 1.54 999,956 1,555,217 1,343,814 1,099,032 2,583,828
    Est. genome size (Mb) 20.45 34.04 24.02 23.61 28.05 27.56
    N50 (bp) 471,680 323,198 601,306 298,270 343,842 883,760
    L50 12 32 13 22 25 11
    # N's per 100 kbp 10 7 14 6 8 5
    GC (%) 61.48 55.75 55.53 60.91 54.63 57.09
    Avg. coverage depth 197 218 305 296 493 619
    No. of predicted genes 6967 9034 7221 7270 7836 7867
    Est. gene density 341 265 301 308 279 286
    Complete BUSCO (%) 95.20 97.10 95.60 95.70 97.40 96.40
    Complete BUSCO (n) 3636 3706 3647 3651 3716 3680
    Complete—single 3631 3699 3644 3648 3710 3673
    Complete—duplicated 5 7 3 3 6 7
    Fragmented 17 23 29 18 17 21
    Missing 164 88 141 148 84 116
    Species Ophiostoma s. l Raffaelea Sporothrix Graphium
    O. fasciatum O. ips O. pallidulum R. deltoideospora S. euskadiensis S. cf. nigrograna S. pseudoabietina Graphium sp.
    Taxon Taxon 8 Taxon 9 Taxon 10 Taxon 11 Taxon 12 Taxon 13 Taxon 14 Taxon 15
    Sequenced strain VPRI43845 VPRI43529 VPRI43846 VPRI43720 VPRI43754 VPRI43755 VPRI43531 VPRI43844
    GenBank Accession JADHKM010000000 JADHKN010000000 JADHKO010000000 JADHKP010000000 JADHKQ010000000 JADHKR010000000 JADHKS010000000 JADHKT010000000
    Total reads after QC 51,287,508 37,261,588 36,666,452 35,927,882 29,627,312 37,781,794 36,719,768 28,160,580
    Number of scaffolds 36 208 473 120 92 125 51 490
    Longest contig (Mb) 2,360,849 1,117,630 543,815 1,965,135 1,881,930 1,307,617 3,412,636 1,008,604
    Est. genome size (Mb) 22.54 26.01 32.66 30.95 36.13 27.34 35.20 31.65
    N50 (bp) 966,108 283,044 126,120 416,364 790,753 398,989 1,285,428 190,968
    L50 9 29 84 25 16 23 9 49
    # N's per 100 kbp 4 8 12 18 11 12 8 12
    GC (%) 65.26 56.88 57.93 54.55 52.70 59.54 53.27 50.12
    Avg. coverage depth 341 209 167 173 122 205 154 132
    No. of predicted genes 7498 7470 8757 7428 9348 7908 9190 9482
    Est. gene density 333 287 268 240 259 289 261 300
    Complete BUSCO (%) 96.60 96.90 97.20 94.90 98.10 97.20 97.80 96.60
    Complete BUSCO (n) 3688 3696 3710 3621 3743 3710 3734 3686
    Complete—single 3685 3690 3705 3613 3739 3703 3729 3679
    Complete—duplicated 3 6 5 8 4 7 5 7
    Fragmented 16 16 28 30 10 23 12 40
    Missing 113 105 79 166 64 84 71 91
  • Corrected table:

    Table 3 Genome summary statistics of representative ophiostomatoid isolates sequenced in this study

    Species Ceratocystiopsis Graphilbum Leptographium s. l Ophiostoma s. l
    Ceratocystiopsis sp. G. fragrans G. ipis-grandicollis sp. nov G. cf. rectangulosporium Gro. huntii Gro. radiaticola O. angusticollis
    Taxon Taxon 1 Taxon 2 Taxon 3 Taxon 4 Taxon 5 Taxon 6 Taxon 7
    Sequenced strain VPRI43766 VPRI43528 VPRI43762 VPRI43763 VPRI43530 VPRI43523 VPRI43764
    GenBank Accession JADHKF010000000 JADHKG010000000 JADHKH010000000 JADHKI010000000 JADHKJ010000000 JADHKK010000000 JADHKL010000000
    Total reads after QC 27,063,242 50,135,289 49,429,518 46,778,484 94,294,776 114,599,394 10,454,088
    Number of scaffolds 79 237 178 117 254 85 317
    Longest contig (Mb) 1,540,000 999,956 1,555,217 1,343,814 1,099,032 2,583,828 651,020
    Est. genome size (Mb) 20.45 34.04 24.02 23.61 28.05 27.56 23.80
    N50 (bp) 471,680 323,198 601,306 298,270 343,842 883,760 236,362
    L50 12 32 13 22 25 11 34
    # N's per 100 kbp 10 7 14 6 8 5 14
    GC (%) 61.48 55.75 55.53 60.91 54.63 57.09 57.89
    Avg. coverage depth 197 218 305 296 493 619 61
    No. of predicted genes 6967 9034 7221 7270 7836 7867 8022
    Est. gene density 341 265 301 308 279 286 337
    Complete BUSCO (%) 95.20 97.10 95.60 95.70 97.40 96.40 96.60
    Complete BUSCO (n) 3636 3706 3647 3651 3716 3680 3686
    Complete—single 3631 3699 3644 3648 3710 3673 3680
    Complete—duplicated 5 7 3 3 6 7 6
    Fragmented 17 23 29 18 17 21 18
    Missing 164 88 141 148 84 116 113
    Species Ophiostoma s. l Raffaelea Sporothrix Graphium
    O. fasciatum O. ips O. pallidulum R. deltoideospora S. euskadiensis S. cf. nigrograna S. pseudoabietina Graphium sp.
    Taxon Taxon 8 Taxon 9 Taxon 10 Taxon 11 Taxon 12 Taxon 13 Taxon 14 Taxon 15
    Sequenced strain VPRI43845 VPRI43529 VPRI43846 VPRI43720 VPRI43754 VPRI43755 VPRI43531 VPRI43844
    GenBank Accession JADHKM010000000 JADHKN010000000 JADHKO010000000 JADHKP010000000 JADHKQ010000000 JADHKR010000000 JADHKS010000000 JADHKT010000000
    Total reads after QC 51,287,508 37,261,588 36,666,452 35,927,882 29,627,312 37,781,794 36,719,768 28,160,580
    Number of scaffolds 36 208 473 120 92 125 51 490
    Longest contig (Mb) 2,360,849 1,117,630 543,815 1,965,135 1,881,930 1,307,617 3,412,636 1,008,604
    Est. genome size (Mb) 22.54 26.01 32.66 30.95 36.13 27.34 35.20 31.65
    N50 (bp) 966,108 283,044 126,120 416,364 790,753 398,989 1,285,428 190,968
    L50 9 29 84 25 16 23 9 49
    # N's per 100 kbp 4 8 12 18 11 12 8 12
    GC (%) 65.26 56.88 57.93 54.55 52.70 59.54 53.27 50.12
    Avg. coverage depth 341 209 167 173 122 205 154 132
    No. of predicted genes 7498 7470 8757 7428 9348 7908 9190 9482
    Est. gene density 333 287 268 240 259 289 261 300
    Complete BUSCO (%) 96.60 96.90 97.20 94.90 98.10 97.20 97.80 96.60
    Complete BUSCO (n) 3688 3696 3710 3621 3743 3710 3734 3686
    Complete—single 3685 3690 3705 3613 3739 3703 3729 3679
    Complete—duplicated 3 6 5 8 4 7 5 7
    Fragmented 16 16 28 30 10 23 12 40
    Missing 113 105 79 166 64 84 71 91

The original article has been corrected.

Reference

  1. Trollip C et al (2021) Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov. IMA Fungus 12:24. https://doi.org/10.1186/s43008-021-00076-w

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Trollip, C., Carnegie, A.J., Dinh, Q. et al. Correction to: Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis‑grandicollis sp. nov. IMA Fungus 12, 27 (2021). https://doi.org/10.1186/s43008-021-00080-0

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